Hb_001100_020

Information

Type -
Description -
Location Contig1100: 17637-18209
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001100_020 0.0 - - -
2 Hb_010452_030 0.0013179949 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
3 Hb_000045_270 0.0040103278 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002400_110 0.0051812966 - - conserved hypothetical protein [Ricinus communis]
5 Hb_072149_010 0.0054234239 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
6 Hb_004944_030 0.007121725 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_001136_140 0.0079745796 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
8 Hb_122911_010 0.0096970896 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
9 Hb_002342_040 0.0169001181 - - FERONIA, partial [Arabis alpina]
10 Hb_187024_020 0.0251881061 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
11 Hb_005426_010 0.0272841607 - - polyprotein [Oryza australiensis]
12 Hb_007592_010 0.0274382959 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
13 Hb_008092_010 0.0295840798 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
14 Hb_188168_010 0.0298446443 - - Arylacetamide deacetylase, putative [Ricinus communis]
15 Hb_003702_020 0.0300277689 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
16 Hb_000370_050 0.030063287 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_039814_010 0.0305677704 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
18 Hb_000002_160 0.0338535 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
19 Hb_042239_010 0.034339446 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_048653_010 0.0356013979 - - PREDICTED: mavicyanin [Jatropha curcas]

Gene co-expression network

sample Hb_001100_020 Hb_001100_020 Hb_010452_030 Hb_010452_030 Hb_001100_020--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_001100_020--Hb_000045_270 Hb_002400_110 Hb_002400_110 Hb_001100_020--Hb_002400_110 Hb_072149_010 Hb_072149_010 Hb_001100_020--Hb_072149_010 Hb_004944_030 Hb_004944_030 Hb_001100_020--Hb_004944_030 Hb_001136_140 Hb_001136_140 Hb_001100_020--Hb_001136_140 Hb_010452_030--Hb_000045_270 Hb_010452_030--Hb_002400_110 Hb_010452_030--Hb_072149_010 Hb_122911_010 Hb_122911_010 Hb_010452_030--Hb_122911_010 Hb_010452_030--Hb_004944_030 Hb_000045_270--Hb_122911_010 Hb_000045_270--Hb_002400_110 Hb_000045_270--Hb_072149_010 Hb_000045_270--Hb_004944_030 Hb_002400_110--Hb_072149_010 Hb_002400_110--Hb_004944_030 Hb_002400_110--Hb_001136_140 Hb_072149_010--Hb_004944_030 Hb_072149_010--Hb_001136_140 Hb_004944_030--Hb_001136_140 Hb_001136_140--Hb_010452_030 Hb_001136_140--Hb_000045_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.169482 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0633793 0

CAGE analysis