Hb_001100_050

Information

Type -
Description -
Location Contig1100: 71646-75518
Sequence    

Annotation

kegg
ID mdm:103421796
description glycoprotein 3-alpha-L-fucosyltransferase A-like
nr
ID XP_008358059.1
description PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0D2S894
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G044300 PE=4 SV=1
Gene Ontology
ID GO:0016020
description alpha fucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03088: 71658-73547 , PASA_asmbl_03089: 75250-93929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001100_050 0.0 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
2 Hb_000699_140 0.051526813 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
3 Hb_007477_080 0.0727950361 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000620_010 0.080152394 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
5 Hb_003641_050 0.0851703156 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
6 Hb_006816_390 0.0861625576 - - protein phosphatase, putative [Ricinus communis]
7 Hb_000072_220 0.0884839387 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
8 Hb_000020_190 0.0894250128 - - hypothetical protein RCOM_0452240 [Ricinus communis]
9 Hb_005662_030 0.0894879659 - - protein with unknown function [Ricinus communis]
10 Hb_001862_190 0.0899328061 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
11 Hb_001017_040 0.0927336714 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
12 Hb_004724_200 0.0968268401 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
13 Hb_000134_090 0.0969189777 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
14 Hb_001322_190 0.0980440176 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
15 Hb_001680_010 0.098296609 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
16 Hb_000761_020 0.0990015669 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
17 Hb_000481_040 0.0993830535 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
18 Hb_048937_040 0.1001470959 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
19 Hb_007064_040 0.1011467115 - - hypothetical protein RCOM_0254640 [Ricinus communis]
20 Hb_000244_250 0.1013004965 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001100_050 Hb_001100_050 Hb_000699_140 Hb_000699_140 Hb_001100_050--Hb_000699_140 Hb_007477_080 Hb_007477_080 Hb_001100_050--Hb_007477_080 Hb_000620_010 Hb_000620_010 Hb_001100_050--Hb_000620_010 Hb_003641_050 Hb_003641_050 Hb_001100_050--Hb_003641_050 Hb_006816_390 Hb_006816_390 Hb_001100_050--Hb_006816_390 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220 Hb_000699_140--Hb_000620_010 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060 Hb_007477_080--Hb_006816_390 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_007477_080--Hb_000134_090 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000436_070 Hb_000436_070 Hb_000620_010--Hb_000436_070 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000922_330 Hb_000922_330 Hb_003641_050--Hb_000922_330 Hb_000481_040 Hb_000481_040 Hb_003641_050--Hb_000481_040 Hb_003641_050--Hb_005662_030 Hb_000649_050 Hb_000649_050 Hb_003641_050--Hb_000649_050 Hb_003641_050--Hb_007477_080 Hb_000034_050 Hb_000034_050 Hb_006816_390--Hb_000034_050 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_000042_270 Hb_000042_270 Hb_006816_390--Hb_000042_270 Hb_004221_020 Hb_004221_020 Hb_000072_220--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_000072_220--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_009548_020 Hb_009548_020 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9971 13.1381 12.136 17.3463 25.1381 39.3991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3353 14.7879 35.7805 12.7832 16.9318

CAGE analysis