Hb_001100_060

Information

Type -
Description -
Location Contig1100: 89448-93469
Sequence    

Annotation

kegg
ID rcu:RCOM_0813330
description glycoprotein 3-alpha-l-fucosyltransferase A, putative (EC:2.4.1.214)
nr
ID XP_002518762.1
description glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
swissprot
ID Q9LJK1
description Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1
trembl
ID B9RYH8
description Glycoprotein 3-alpha-l-fucosyltransferase A, putative OS=Ricinus communis GN=RCOM_0813330 PE=3 SV=1
Gene Ontology
ID GO:0016020
description glycoprotein 3-alpha-l-fucosyltransferase a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03089: 75250-93929 , PASA_asmbl_03090: 91601-93266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001100_060 0.0 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
2 Hb_000671_050 0.0815833425 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_011316_040 0.0837032834 - - peptidase, putative [Ricinus communis]
4 Hb_005663_060 0.0849354314 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
5 Hb_002046_190 0.0858204345 - - calcium-binding family protein [Populus trichocarpa]
6 Hb_000173_290 0.0876192391 - - guanylate kinase, putative [Ricinus communis]
7 Hb_001959_070 0.0904234005 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
8 Hb_003001_120 0.0910938558 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
9 Hb_055488_010 0.0932141045 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
10 Hb_003929_160 0.0941855571 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
11 Hb_000840_030 0.0957921982 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
12 Hb_001269_680 0.096497986 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
13 Hb_003376_040 0.0968044353 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
14 Hb_000409_020 0.0970897987 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
15 Hb_003206_070 0.0976997396 - - organic anion transporter, putative [Ricinus communis]
16 Hb_006541_030 0.0994429485 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
17 Hb_004724_420 0.0995295616 - - fucose synthetase, putative [Ricinus communis]
18 Hb_000236_070 0.1003221432 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032202_190 0.1010166866 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
20 Hb_010504_020 0.1025829249 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_001100_060 Hb_001100_060 Hb_000671_050 Hb_000671_050 Hb_001100_060--Hb_000671_050 Hb_011316_040 Hb_011316_040 Hb_001100_060--Hb_011316_040 Hb_005663_060 Hb_005663_060 Hb_001100_060--Hb_005663_060 Hb_002046_190 Hb_002046_190 Hb_001100_060--Hb_002046_190 Hb_000173_290 Hb_000173_290 Hb_001100_060--Hb_000173_290 Hb_001959_070 Hb_001959_070 Hb_001100_060--Hb_001959_070 Hb_000035_320 Hb_000035_320 Hb_000671_050--Hb_000035_320 Hb_000976_410 Hb_000976_410 Hb_000671_050--Hb_000976_410 Hb_000876_070 Hb_000876_070 Hb_000671_050--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_000671_050--Hb_004724_080 Hb_002105_040 Hb_002105_040 Hb_000671_050--Hb_002105_040 Hb_001277_330 Hb_001277_330 Hb_011316_040--Hb_001277_330 Hb_000236_070 Hb_000236_070 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000648_110 Hb_000648_110 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_000009_080 Hb_000009_080 Hb_002046_190--Hb_000009_080 Hb_002762_120 Hb_002762_120 Hb_002046_190--Hb_002762_120 Hb_055488_010 Hb_055488_010 Hb_002046_190--Hb_055488_010 Hb_000699_140 Hb_000699_140 Hb_002046_190--Hb_000699_140 Hb_000012_430 Hb_000012_430 Hb_002046_190--Hb_000012_430 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_001348_180 Hb_001348_180 Hb_001959_070--Hb_001348_180 Hb_001959_070--Hb_000173_290 Hb_002205_070 Hb_002205_070 Hb_001959_070--Hb_002205_070 Hb_004837_030 Hb_004837_030 Hb_001959_070--Hb_004837_030 Hb_001959_070--Hb_000236_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.611 10.6597 12.3599 21.0447 17.4669 31.6224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9336 29.5679 32.0995 9.87975 19.9102

CAGE analysis