Hb_001100_070

Information

Type -
Description -
Location Contig1100: 111120-114048
Sequence    

Annotation

kegg
ID rcu:RCOM_0813440
description Ferredoxin--nitrite reductase, chloroplast precursor, putative (EC:1.7.7.1)
nr
ID XP_012066871.1
description PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID P38500
description Ferredoxin--nitrite reductase, chloroplastic OS=Betula pendula GN=NIR1 PE=2 SV=1
trembl
ID A0A067LCR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01599 PE=4 SV=1
Gene Ontology
ID GO:0016491
description ferredoxin--nitrite chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03092: 111093-114197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001100_070 0.0 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001289_010 0.0577902754 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
3 Hb_009393_090 0.0697302749 - - acyltransferase, putative [Ricinus communis]
4 Hb_000818_090 0.0783363307 - - glutamate receptor 3 plant, putative [Ricinus communis]
5 Hb_000718_060 0.0796501116 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
6 Hb_000617_330 0.0839396172 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
7 Hb_007270_020 0.1002643594 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
8 Hb_005365_010 0.1041861162 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
9 Hb_011909_050 0.1049116799 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
10 Hb_013394_120 0.1056066795 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
11 Hb_008221_200 0.1066394703 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
12 Hb_001789_120 0.1072884583 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
13 Hb_003873_020 0.1076047099 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
14 Hb_005694_160 0.1077979395 - - conserved hypothetical protein [Ricinus communis]
15 Hb_039075_020 0.1079281315 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
16 Hb_002942_200 0.1153640957 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
17 Hb_001750_020 0.1171957698 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
18 Hb_028008_040 0.1172823135 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001032_020 0.1189584988 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_003435_030 0.1216805555 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001100_070 Hb_001100_070 Hb_001289_010 Hb_001289_010 Hb_001100_070--Hb_001289_010 Hb_009393_090 Hb_009393_090 Hb_001100_070--Hb_009393_090 Hb_000818_090 Hb_000818_090 Hb_001100_070--Hb_000818_090 Hb_000718_060 Hb_000718_060 Hb_001100_070--Hb_000718_060 Hb_000617_330 Hb_000617_330 Hb_001100_070--Hb_000617_330 Hb_007270_020 Hb_007270_020 Hb_001100_070--Hb_007270_020 Hb_001289_010--Hb_000617_330 Hb_001289_010--Hb_009393_090 Hb_001289_010--Hb_000718_060 Hb_000434_060 Hb_000434_060 Hb_001289_010--Hb_000434_060 Hb_001289_010--Hb_000818_090 Hb_009393_090--Hb_000718_060 Hb_009393_090--Hb_000818_090 Hb_008221_200 Hb_008221_200 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_009393_090--Hb_007270_020 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_000718_060--Hb_008221_200 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020 Hb_000617_330--Hb_000718_060 Hb_001794_040 Hb_001794_040 Hb_000617_330--Hb_001794_040 Hb_000617_330--Hb_008221_200 Hb_000012_350 Hb_000012_350 Hb_000617_330--Hb_000012_350 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_060253_010 Hb_060253_010 Hb_007270_020--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_007270_020--Hb_003873_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0786112 8.01605 18.3408 21.1141 0.34429 0.345776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.77706 20.1892

CAGE analysis