Hb_001101_010

Information

Type -
Description -
Location Contig1101: 670-3048
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18730g
description POPTRDRAFT_556695; hypothetical protein
nr
ID XP_002306213.1
description hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
swissprot
ID P29162
description L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9H1N4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18730g PE=4 SV=1
Gene Ontology
ID GO:0009505
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001101_010 0.0 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
2 Hb_002918_300 0.1585518429 - - -
3 Hb_000032_350 0.1622248538 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001007_050 0.1670886574 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
5 Hb_001425_110 0.1714712411 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
6 Hb_032660_020 0.1742010371 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
7 Hb_010172_100 0.1752287882 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
8 Hb_000300_210 0.1753950999 - - gd2b, putative [Ricinus communis]
9 Hb_001504_320 0.1759795113 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
10 Hb_000387_060 0.1770161295 - - -
11 Hb_002260_020 0.1800056795 - - -
12 Hb_008705_090 0.1826104059 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
13 Hb_001842_080 0.1829468594 - - -
14 Hb_003592_070 0.1836789838 - - -
15 Hb_000270_730 0.184579619 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
16 Hb_003376_210 0.1849421622 - - -
17 Hb_000329_660 0.1875809888 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
18 Hb_000714_010 0.1876150987 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
19 Hb_183612_080 0.1877559243 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
20 Hb_001842_120 0.1886564308 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_001101_010 Hb_001101_010 Hb_002918_300 Hb_002918_300 Hb_001101_010--Hb_002918_300 Hb_000032_350 Hb_000032_350 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001425_110 Hb_001425_110 Hb_001101_010--Hb_001425_110 Hb_032660_020 Hb_032660_020 Hb_001101_010--Hb_032660_020 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_000714_010 Hb_000714_010 Hb_002918_300--Hb_000714_010 Hb_001799_040 Hb_001799_040 Hb_002918_300--Hb_001799_040 Hb_002431_060 Hb_002431_060 Hb_002918_300--Hb_002431_060 Hb_003376_210 Hb_003376_210 Hb_002918_300--Hb_003376_210 Hb_002918_300--Hb_032660_020 Hb_000696_220 Hb_000696_220 Hb_000032_350--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_001007_050--Hb_010172_100 Hb_008705_090 Hb_008705_090 Hb_001007_050--Hb_008705_090 Hb_003777_230 Hb_003777_230 Hb_001007_050--Hb_003777_230 Hb_004474_010 Hb_004474_010 Hb_001007_050--Hb_004474_010 Hb_002260_020 Hb_002260_020 Hb_001007_050--Hb_002260_020 Hb_001504_320 Hb_001504_320 Hb_001425_110--Hb_001504_320 Hb_000300_210 Hb_000300_210 Hb_001425_110--Hb_000300_210 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001842_120 Hb_001842_120 Hb_001425_110--Hb_001842_120 Hb_032660_020--Hb_000387_060 Hb_032660_020--Hb_000714_010 Hb_003592_070 Hb_003592_070 Hb_032660_020--Hb_003592_070 Hb_003050_070 Hb_003050_070 Hb_032660_020--Hb_003050_070 Hb_005908_040 Hb_005908_040 Hb_010172_100--Hb_005908_040 Hb_006351_110 Hb_006351_110 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_000316_100 Hb_000316_100 Hb_010172_100--Hb_000316_100 Hb_001922_080 Hb_001922_080 Hb_010172_100--Hb_001922_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05519 0.379779 1.4904 0.345118 4.64402 3.45889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.3008 59.4599 5.54307 1.15952 0.245802

CAGE analysis