Hb_001101_020

Information

Type -
Description -
Location Contig1101: 51264-53349
Sequence    

Annotation

kegg
ID rcu:RCOM_0615680
description hypothetical protein
nr
ID XP_002528420.1
description hypothetical protein RCOM_0615680 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0615680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03106: 51414-53451
cDNA
(Sanger)
(ID:Location)		 014_O01.ab1: 51414-52978

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001101_020 0.0 - - hypothetical protein RCOM_0615680 [Ricinus communis]
2 Hb_001377_480 0.1073086496 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
3 Hb_142522_030 0.1145777427 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
4 Hb_111985_120 0.1177234759 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
5 Hb_001789_010 0.1200718334 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
6 Hb_187211_010 0.1209306986 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
7 Hb_129204_050 0.1224193026 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
8 Hb_001775_050 0.1257085471 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
9 Hb_000625_130 0.1306567711 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
10 Hb_000705_100 0.1431484364 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_005653_100 0.1451453519 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
12 Hb_000101_370 0.1466940531 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
13 Hb_111693_010 0.165361156 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
14 Hb_000917_330 0.168581442 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
15 Hb_116469_010 0.169577153 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
16 Hb_004055_080 0.1698331977 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_008775_050 0.1699397443 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
18 Hb_000705_090 0.171038108 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
19 Hb_025469_040 0.1712051565 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
20 Hb_000631_130 0.1728856298 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_001101_020 Hb_001101_020 Hb_001377_480 Hb_001377_480 Hb_001101_020--Hb_001377_480 Hb_142522_030 Hb_142522_030 Hb_001101_020--Hb_142522_030 Hb_111985_120 Hb_111985_120 Hb_001101_020--Hb_111985_120 Hb_001789_010 Hb_001789_010 Hb_001101_020--Hb_001789_010 Hb_187211_010 Hb_187211_010 Hb_001101_020--Hb_187211_010 Hb_129204_050 Hb_129204_050 Hb_001101_020--Hb_129204_050 Hb_001377_480--Hb_187211_010 Hb_001377_480--Hb_111985_120 Hb_000625_130 Hb_000625_130 Hb_001377_480--Hb_000625_130 Hb_001377_480--Hb_001789_010 Hb_001377_480--Hb_142522_030 Hb_142522_030--Hb_000625_130 Hb_000917_330 Hb_000917_330 Hb_142522_030--Hb_000917_330 Hb_131864_020 Hb_131864_020 Hb_142522_030--Hb_131864_020 Hb_007044_070 Hb_007044_070 Hb_142522_030--Hb_007044_070 Hb_111985_120--Hb_001789_010 Hb_111693_010 Hb_111693_010 Hb_111985_120--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_111985_120--Hb_000220_170 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_001789_010--Hb_111693_010 Hb_001789_010--Hb_000220_170 Hb_001789_010--Hb_187211_010 Hb_002553_100 Hb_002553_100 Hb_001789_010--Hb_002553_100 Hb_187211_010--Hb_111985_120 Hb_187211_010--Hb_000625_130 Hb_187211_010--Hb_142522_030 Hb_001775_050 Hb_001775_050 Hb_129204_050--Hb_001775_050 Hb_000705_100 Hb_000705_100 Hb_129204_050--Hb_000705_100 Hb_000705_060 Hb_000705_060 Hb_129204_050--Hb_000705_060 Hb_001369_320 Hb_001369_320 Hb_129204_050--Hb_001369_320 Hb_000057_160 Hb_000057_160 Hb_129204_050--Hb_000057_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0176412 0.357984 2.18348 0.295201 0 0.0184797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.25541 0.0656101

CAGE analysis