Hb_001102_010

Information

Type -
Description -
Location Contig1102: 1941-10494
Sequence    

Annotation

kegg
ID gmx:100792725
description solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like
nr
ID XP_006579913.1
description PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
swissprot
ID Q5HZ00
description Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
trembl
ID K7KPC1
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0016740
description solanesyl diphosphate synthase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_010 0.0 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
2 Hb_000078_030 0.0725468125 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011457_100 0.0833376281 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002835_170 0.0883312322 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
5 Hb_000787_070 0.0891283143 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
6 Hb_005016_130 0.0942024655 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_000193_230 0.097991862 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
8 Hb_000580_170 0.1022127632 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
9 Hb_001478_050 0.1037552298 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
10 Hb_012799_060 0.104786748 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
11 Hb_002298_040 0.1072343105 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
12 Hb_116349_150 0.1078202894 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
13 Hb_001191_100 0.1083693488 - - F-actin capping protein beta subunit [Populus trichocarpa]
14 Hb_001741_080 0.1088186005 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
15 Hb_006787_040 0.109139523 - - polyadenylate-binding protein, putative [Ricinus communis]
16 Hb_000849_040 0.1095178682 - - transcription factor, putative [Ricinus communis]
17 Hb_006132_060 0.113272769 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
18 Hb_002387_060 0.1134489775 - - conserved hypothetical protein [Ricinus communis]
19 Hb_115919_020 0.1149952732 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
20 Hb_030765_020 0.1156214512 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001102_010 Hb_001102_010 Hb_000078_030 Hb_000078_030 Hb_001102_010--Hb_000078_030 Hb_011457_100 Hb_011457_100 Hb_001102_010--Hb_011457_100 Hb_002835_170 Hb_002835_170 Hb_001102_010--Hb_002835_170 Hb_000787_070 Hb_000787_070 Hb_001102_010--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_001102_010--Hb_005016_130 Hb_000193_230 Hb_000193_230 Hb_001102_010--Hb_000193_230 Hb_000078_030--Hb_000193_230 Hb_000284_010 Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000078_030--Hb_115919_020 Hb_002298_040 Hb_002298_040 Hb_000078_030--Hb_002298_040 Hb_011457_100--Hb_002835_170 Hb_027751_020 Hb_027751_020 Hb_011457_100--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_011457_100--Hb_000563_540 Hb_002609_260 Hb_002609_260 Hb_011457_100--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_011457_100--Hb_000264_190 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_000787_070--Hb_005016_130 Hb_000787_070--Hb_115919_020 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000787_070--Hb_000078_030 Hb_005016_130--Hb_115919_020 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_005016_130--Hb_000284_010 Hb_000193_230--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_000193_230--Hb_115919_020 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_000193_230--Hb_000284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9045 0.730129 0.408302 1.53137 24.3517 24.5334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.6526 36.7291 35.2573 2.45311 1.15419

CAGE analysis