Hb_001102_020

Information

Type -
Description -
Location Contig1102: 13205-23681
Sequence    

Annotation

kegg
ID rcu:RCOM_1182760
description solanesyl diphosphate synthase, putative (EC:2.5.1.30)
nr
ID ABD92707.1
description solanesyl diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q76FS5
description Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=SPS2 PE=1 SV=1
trembl
ID Q1W5D1
description Solanesyl diphosphate synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0036422
description solanesyl diphosphate synthase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03123: 18527-23605 , PASA_asmbl_03125: 19927-20040 , PASA_asmbl_03126: 18527-23376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_020 0.0 - - solanesyl diphosphate synthase [Hevea brasiliensis]
2 Hb_001504_030 0.0903898782 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
3 Hb_003935_060 0.1091061761 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
4 Hb_000721_030 0.1181633728 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
5 Hb_001250_070 0.1292516786 - - ATP-citrate synthase, putative [Ricinus communis]
6 Hb_000244_180 0.1307613614 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003728_100 0.1331825235 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
8 Hb_000108_050 0.1338397548 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
9 Hb_000189_480 0.1365129367 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
10 Hb_000320_340 0.1374700528 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
11 Hb_009225_020 0.1392413655 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
12 Hb_000371_100 0.1411254644 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
13 Hb_048093_010 0.1427745078 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
14 Hb_133702_010 0.1437363322 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_156850_100 0.1441216891 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
16 Hb_012305_100 0.1447459334 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_003082_030 0.1454415471 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
18 Hb_113818_010 0.1464612452 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
19 Hb_001606_060 0.1483825125 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001981_040 0.1489176374 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]

Gene co-expression network

sample Hb_001102_020 Hb_001102_020 Hb_001504_030 Hb_001504_030 Hb_001102_020--Hb_001504_030 Hb_003935_060 Hb_003935_060 Hb_001102_020--Hb_003935_060 Hb_000721_030 Hb_000721_030 Hb_001102_020--Hb_000721_030 Hb_001250_070 Hb_001250_070 Hb_001102_020--Hb_001250_070 Hb_000244_180 Hb_000244_180 Hb_001102_020--Hb_000244_180 Hb_003728_100 Hb_003728_100 Hb_001102_020--Hb_003728_100 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_001504_030--Hb_000721_030 Hb_003935_060--Hb_001504_030 Hb_000365_130 Hb_000365_130 Hb_003935_060--Hb_000365_130 Hb_003935_060--Hb_001250_070 Hb_003935_060--Hb_000721_030 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_001250_070--Hb_000721_030 Hb_001250_070--Hb_000365_130 Hb_003411_090 Hb_003411_090 Hb_001250_070--Hb_003411_090 Hb_001250_070--Hb_001504_030 Hb_001022_030 Hb_001022_030 Hb_001250_070--Hb_001022_030 Hb_000244_180--Hb_012573_050 Hb_004754_050 Hb_004754_050 Hb_000244_180--Hb_004754_050 Hb_171215_010 Hb_171215_010 Hb_000244_180--Hb_171215_010 Hb_007975_060 Hb_007975_060 Hb_000244_180--Hb_007975_060 Hb_000244_180--Hb_000721_030 Hb_001876_040 Hb_001876_040 Hb_000244_180--Hb_001876_040 Hb_009225_020 Hb_009225_020 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003462_070 Hb_003462_070 Hb_003728_100--Hb_003462_070 Hb_003728_100--Hb_001022_030 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9959 5.06856 30.783 35.18 7.56285 14.2124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1091 11.0796 17.0283 12.0861 37.3468

CAGE analysis