Hb_001102_060

Information

Type -
Description -
Location Contig1102: 46942-48597
Sequence    

Annotation

kegg
ID pmum:103325888
description receptor-like serine/threonine-protein kinase At1g78530
nr
ID XP_012070211.1
description PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
swissprot
ID Q9SYM9
description Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana GN=At1g78530 PE=2 SV=1
trembl
ID A0A067L6T1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04938 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase at1g78530

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03130: 47069-47725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_060 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
2 Hb_178252_010 0.0774860068 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
3 Hb_027242_010 0.0987465701 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
4 Hb_007017_120 0.132501746 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
5 Hb_003480_010 0.1411638506 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_000101_370 0.1461509215 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
7 Hb_000364_130 0.1522900686 - - unnamed protein product [Vitis vinifera]
8 Hb_002559_010 0.1530817729 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
9 Hb_003166_020 0.1543780478 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
10 Hb_032621_010 0.155535687 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
11 Hb_010053_010 0.1595076653 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
12 Hb_002809_020 0.1597323652 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
13 Hb_055154_010 0.1635120732 - - PREDICTED: laccase-7 [Jatropha curcas]
14 Hb_021888_010 0.1657251109 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
15 Hb_000832_250 0.1658568384 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
16 Hb_028927_010 0.1691144011 - - leucine-rich repeat protein, putative [Ricinus communis]
17 Hb_006573_260 0.1711728144 - - -
18 Hb_003020_340 0.1715774823 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
19 Hb_069151_010 0.1744593772 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
20 Hb_003226_050 0.1800917918 - - Pectinesterase-3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001102_060 Hb_001102_060 Hb_178252_010 Hb_178252_010 Hb_001102_060--Hb_178252_010 Hb_027242_010 Hb_027242_010 Hb_001102_060--Hb_027242_010 Hb_007017_120 Hb_007017_120 Hb_001102_060--Hb_007017_120 Hb_003480_010 Hb_003480_010 Hb_001102_060--Hb_003480_010 Hb_000101_370 Hb_000101_370 Hb_001102_060--Hb_000101_370 Hb_000364_130 Hb_000364_130 Hb_001102_060--Hb_000364_130 Hb_002809_020 Hb_002809_020 Hb_178252_010--Hb_002809_020 Hb_178252_010--Hb_007017_120 Hb_178252_010--Hb_027242_010 Hb_055154_010 Hb_055154_010 Hb_178252_010--Hb_055154_010 Hb_178252_010--Hb_003480_010 Hb_027242_010--Hb_003480_010 Hb_027242_010--Hb_000101_370 Hb_000057_210 Hb_000057_210 Hb_027242_010--Hb_000057_210 Hb_069151_010 Hb_069151_010 Hb_027242_010--Hb_069151_010 Hb_008418_010 Hb_008418_010 Hb_007017_120--Hb_008418_010 Hb_007017_120--Hb_002809_020 Hb_003768_100 Hb_003768_100 Hb_007017_120--Hb_003768_100 Hb_000723_240 Hb_000723_240 Hb_007017_120--Hb_000723_240 Hb_003166_020 Hb_003166_020 Hb_007017_120--Hb_003166_020 Hb_003480_010--Hb_069151_010 Hb_003480_010--Hb_055154_010 Hb_003020_340 Hb_003020_340 Hb_003480_010--Hb_003020_340 Hb_003480_010--Hb_000057_210 Hb_164300_010 Hb_164300_010 Hb_000101_370--Hb_164300_010 Hb_000215_420 Hb_000215_420 Hb_000101_370--Hb_000215_420 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_002081_220 Hb_002081_220 Hb_000101_370--Hb_002081_220 Hb_006573_260 Hb_006573_260 Hb_000101_370--Hb_006573_260 Hb_002559_010 Hb_002559_010 Hb_000364_130--Hb_002559_010 Hb_003226_050 Hb_003226_050 Hb_000364_130--Hb_003226_050 Hb_005503_010 Hb_005503_010 Hb_000364_130--Hb_005503_010 Hb_000364_130--Hb_178252_010 Hb_000364_130--Hb_007017_120 Hb_006277_030 Hb_006277_030 Hb_000364_130--Hb_006277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0175896 0.0146073 2.80579 1.76929 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0401699 0 0 5.66992 0.327125

CAGE analysis