Hb_001102_130

Information

Type transcription factor
Description TF Family: PHD
Location Contig1102: 120289-121266
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39150g
description POPTRDRAFT_798206; PHD finger family protein
nr
ID XP_011045558.1
description PREDICTED: protein Jade-1 [Populus euphratica]
swissprot
ID Q803A0
description Protein Jade-1 OS=Danio rerio GN=jade1 PE=2 SV=1
trembl
ID B9GHE7
description PHD finger family protein OS=Populus trichocarpa GN=POPTR_0001s39150g PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein jade-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_130 0.0 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
2 Hb_000809_190 0.1053928028 - - PREDICTED: myosin-6-like [Jatropha curcas]
3 Hb_080922_010 0.1069482813 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_000445_270 0.1124043111 - - ATP binding protein, putative [Ricinus communis]
5 Hb_124677_010 0.1135760477 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002025_220 0.1195380211 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
7 Hb_004920_020 0.1221462924 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
8 Hb_000705_010 0.1231849348 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
9 Hb_000359_050 0.1261798654 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
10 Hb_012807_030 0.1280347426 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
11 Hb_001006_150 0.1313262194 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_101133_030 0.1320254062 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_002762_020 0.1332762557 - - hypothetical protein VITISV_043202 [Vitis vinifera]
14 Hb_005211_080 0.1340188969 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
15 Hb_004306_090 0.1355795063 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
16 Hb_005649_060 0.1358762095 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
17 Hb_003536_020 0.1359825281 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
18 Hb_000340_280 0.1367094013 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003937_010 0.1367768997 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
20 Hb_000280_030 0.1370855713 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]

Gene co-expression network

sample Hb_001102_130 Hb_001102_130 Hb_000809_190 Hb_000809_190 Hb_001102_130--Hb_000809_190 Hb_080922_010 Hb_080922_010 Hb_001102_130--Hb_080922_010 Hb_000445_270 Hb_000445_270 Hb_001102_130--Hb_000445_270 Hb_124677_010 Hb_124677_010 Hb_001102_130--Hb_124677_010 Hb_002025_220 Hb_002025_220 Hb_001102_130--Hb_002025_220 Hb_004920_020 Hb_004920_020 Hb_001102_130--Hb_004920_020 Hb_000809_190--Hb_000445_270 Hb_000115_020 Hb_000115_020 Hb_000809_190--Hb_000115_020 Hb_101133_030 Hb_101133_030 Hb_000809_190--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_000809_190--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_000809_190--Hb_001864_050 Hb_000749_140 Hb_000749_140 Hb_000809_190--Hb_000749_140 Hb_003536_020 Hb_003536_020 Hb_080922_010--Hb_003536_020 Hb_080922_010--Hb_000445_270 Hb_007477_060 Hb_007477_060 Hb_080922_010--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_080922_010--Hb_002871_180 Hb_000705_010 Hb_000705_010 Hb_080922_010--Hb_000705_010 Hb_005329_010 Hb_005329_010 Hb_080922_010--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000445_270--Hb_001006_150 Hb_005649_060 Hb_005649_060 Hb_000445_270--Hb_005649_060 Hb_000359_050 Hb_000359_050 Hb_000445_270--Hb_000359_050 Hb_000445_270--Hb_005329_010 Hb_000445_270--Hb_001864_050 Hb_124677_010--Hb_101133_030 Hb_012807_030 Hb_012807_030 Hb_124677_010--Hb_012807_030 Hb_000866_060 Hb_000866_060 Hb_124677_010--Hb_000866_060 Hb_015044_010 Hb_015044_010 Hb_124677_010--Hb_015044_010 Hb_124677_010--Hb_000749_140 Hb_000128_040 Hb_000128_040 Hb_124677_010--Hb_000128_040 Hb_005305_140 Hb_005305_140 Hb_002025_220--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_002025_220--Hb_000834_170 Hb_002025_220--Hb_000809_190 Hb_002025_220--Hb_000445_270 Hb_004920_020--Hb_000128_040 Hb_000950_020 Hb_000950_020 Hb_004920_020--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_004920_020--Hb_005000_110 Hb_000544_070 Hb_000544_070 Hb_004920_020--Hb_000544_070 Hb_005211_080 Hb_005211_080 Hb_004920_020--Hb_005211_080 Hb_000300_110 Hb_000300_110 Hb_004920_020--Hb_000300_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.143027 1.23332 0.178121 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0427852 0 0.0861528 1.30738

CAGE analysis