Hb_001102_140

Information

Type -
Description -
Location Contig1102: 127316-133786
Sequence    

Annotation

kegg
ID cic:CICLE_v10008843mg
description hypothetical protein
nr
ID XP_012079753.1
description PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
swissprot
ID Q8LA53
description Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1
trembl
ID A0A067LM24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17442 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03143: 127300-131586 , PASA_asmbl_03144: 127537-133770 , PASA_asmbl_03146: 131423-133773
cDNA
(Sanger)
(ID:Location)		 011_I06.ab1: 127302-129406 , 016_B12.ab1: 127302-129383

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_140 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
2 Hb_093084_050 0.0692120693 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
3 Hb_106724_020 0.0723758323 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
4 Hb_000656_110 0.073965275 - - nucleolysin tia-1, putative [Ricinus communis]
5 Hb_005054_290 0.074322768 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
6 Hb_000000_460 0.0837335633 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
7 Hb_002685_110 0.0838221943 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
8 Hb_003057_100 0.085937324 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
9 Hb_004055_030 0.0882188611 - - casein kinase, putative [Ricinus communis]
10 Hb_000445_420 0.0952016066 - - protein transporter, putative [Ricinus communis]
11 Hb_000003_480 0.0998355062 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
12 Hb_007441_120 0.1002113774 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
13 Hb_003693_070 0.1004371317 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
14 Hb_145314_010 0.1007025428 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
15 Hb_002774_060 0.1019333917 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
16 Hb_065525_020 0.1024808362 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
17 Hb_003092_040 0.1043680024 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
18 Hb_003918_010 0.1044859272 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
19 Hb_007416_280 0.1046788407 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027472_150 0.105313615 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_140 Hb_001102_140 Hb_093084_050 Hb_093084_050 Hb_001102_140--Hb_093084_050 Hb_106724_020 Hb_106724_020 Hb_001102_140--Hb_106724_020 Hb_000656_110 Hb_000656_110 Hb_001102_140--Hb_000656_110 Hb_005054_290 Hb_005054_290 Hb_001102_140--Hb_005054_290 Hb_000000_460 Hb_000000_460 Hb_001102_140--Hb_000000_460 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_093084_050--Hb_000656_110 Hb_001898_220 Hb_001898_220 Hb_093084_050--Hb_001898_220 Hb_003057_100 Hb_003057_100 Hb_093084_050--Hb_003057_100 Hb_000041_050 Hb_000041_050 Hb_093084_050--Hb_000041_050 Hb_000445_420 Hb_000445_420 Hb_093084_050--Hb_000445_420 Hb_000630_050 Hb_000630_050 Hb_106724_020--Hb_000630_050 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_000808_280 Hb_000808_280 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130 Hb_000656_110--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_000656_110--Hb_000700_110 Hb_003125_010 Hb_003125_010 Hb_000656_110--Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_000656_110--Hb_001369_690 Hb_005054_290--Hb_000000_460 Hb_000329_630 Hb_000329_630 Hb_005054_290--Hb_000329_630 Hb_001439_100 Hb_001439_100 Hb_005054_290--Hb_001439_100 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_000000_460--Hb_001439_100 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010 Hb_000000_460--Hb_000329_630 Hb_017224_030 Hb_017224_030 Hb_002685_110--Hb_017224_030 Hb_000249_070 Hb_000249_070 Hb_002685_110--Hb_000249_070 Hb_003761_010 Hb_003761_010 Hb_002685_110--Hb_003761_010 Hb_005291_030 Hb_005291_030 Hb_002685_110--Hb_005291_030 Hb_002473_130 Hb_002473_130 Hb_002685_110--Hb_002473_130 Hb_000035_320 Hb_000035_320 Hb_002685_110--Hb_000035_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8317 10.7298 8.0714 17.0692 15.7619 20.4901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3381 14.4724 18.2583 11.9274 6.42322

CAGE analysis