Hb_001102_200

Information

Type -
Description -
Location Contig1102: 191553-195086
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10480g
description NAD-dependent epimerase/dehydratase family protein
nr
ID XP_012080935.1
description PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
swissprot
ID Q9SYM5
description Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1
trembl
ID A0A067KF69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17141 PE=4 SV=1
Gene Ontology
ID GO:0008460
description trifunctional udp-glucose -dehydratase udp-4-keto-6-deoxy-d-glucose -epimerase udp-4-keto-l-rhamnose-reductase rhm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03159: 191588-195094
cDNA
(Sanger)
(ID:Location)		 032_I21.ab1: 191590-192983 , 045_N21.ab1: 191588-193216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_200 0.0 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
2 Hb_000110_260 0.0902981818 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
3 Hb_000320_270 0.1079957324 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
4 Hb_000329_790 0.1207747048 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
5 Hb_005064_070 0.1238588175 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
6 Hb_005725_280 0.1252007566 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
7 Hb_089305_010 0.1256274056 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
8 Hb_009449_100 0.1262697255 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
9 Hb_005080_020 0.1279080584 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
10 Hb_001226_170 0.1285245485 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_001474_050 0.1319593634 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
12 Hb_000120_090 0.1327629072 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
13 Hb_003430_070 0.1328664387 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
14 Hb_000753_120 0.133725147 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
15 Hb_001294_050 0.1342789985 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
16 Hb_001329_080 0.1346408527 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
17 Hb_132840_020 0.1359323619 - - PREDICTED: protein LHY [Jatropha curcas]
18 Hb_007382_100 0.1364044703 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
19 Hb_048476_040 0.1368692122 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
20 Hb_001318_140 0.1369905249 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_200 Hb_001102_200 Hb_000110_260 Hb_000110_260 Hb_001102_200--Hb_000110_260 Hb_000320_270 Hb_000320_270 Hb_001102_200--Hb_000320_270 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_005725_280 Hb_005725_280 Hb_001102_200--Hb_005725_280 Hb_089305_010 Hb_089305_010 Hb_001102_200--Hb_089305_010 Hb_000110_260--Hb_089305_010 Hb_000120_090 Hb_000120_090 Hb_000110_260--Hb_000120_090 Hb_021409_110 Hb_021409_110 Hb_000110_260--Hb_021409_110 Hb_005408_080 Hb_005408_080 Hb_000110_260--Hb_005408_080 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_001948_090 Hb_001948_090 Hb_000320_270--Hb_001948_090 Hb_005408_100 Hb_005408_100 Hb_000320_270--Hb_005408_100 Hb_000230_470 Hb_000230_470 Hb_000320_270--Hb_000230_470 Hb_003912_080 Hb_003912_080 Hb_000320_270--Hb_003912_080 Hb_012308_050 Hb_012308_050 Hb_000320_270--Hb_012308_050 Hb_000329_790--Hb_005064_070 Hb_048476_040 Hb_048476_040 Hb_000329_790--Hb_048476_040 Hb_132840_020 Hb_132840_020 Hb_000329_790--Hb_132840_020 Hb_009449_100 Hb_009449_100 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050 Hb_005064_070--Hb_048476_040 Hb_003670_030 Hb_003670_030 Hb_005064_070--Hb_003670_030 Hb_054865_050 Hb_054865_050 Hb_005064_070--Hb_054865_050 Hb_005064_070--Hb_009449_100 Hb_000375_060 Hb_000375_060 Hb_005064_070--Hb_000375_060 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_089305_010--Hb_000120_090 Hb_001621_050 Hb_001621_050 Hb_089305_010--Hb_001621_050 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_089305_010--Hb_021409_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6641 192.526 146.034 172.95 3.66796 9.49715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4902 11.7538 22.5738 35.2997 103.989

CAGE analysis