Hb_001102_210

Information

Type -
Description -
Location Contig1102: 204012-222585
Sequence    

Annotation

kegg
ID rcu:RCOM_0493750
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_012076093.1
description PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SYM4
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1
trembl
ID A0A067KEC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11938 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03162: 221728-222433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_210 0.0 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
2 Hb_002078_440 0.1081665247 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
3 Hb_013405_140 0.1250998717 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
4 Hb_000140_360 0.1273253499 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
5 Hb_000059_010 0.1279780524 - - amino acid binding protein, putative [Ricinus communis]
6 Hb_000340_310 0.1295145942 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
7 Hb_000815_290 0.1333487979 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
8 Hb_011485_020 0.1353482195 - - protein with unknown function [Ricinus communis]
9 Hb_011021_040 0.146895286 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_000111_450 0.1473387031 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
11 Hb_002016_080 0.1488217548 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
12 Hb_130719_010 0.1489293744 - - V-type proton ATPase subunit E [Hevea brasiliensis]
13 Hb_083380_010 0.1532617996 - - -
14 Hb_003783_030 0.1533804014 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
15 Hb_000007_140 0.1536079816 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
16 Hb_013399_050 0.1541500527 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
17 Hb_007037_020 0.1566399319 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
18 Hb_002026_120 0.1567291594 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
19 Hb_005496_090 0.1628894663 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
20 Hb_000377_150 0.1631972937 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]

Gene co-expression network

sample Hb_001102_210 Hb_001102_210 Hb_002078_440 Hb_002078_440 Hb_001102_210--Hb_002078_440 Hb_013405_140 Hb_013405_140 Hb_001102_210--Hb_013405_140 Hb_000140_360 Hb_000140_360 Hb_001102_210--Hb_000140_360 Hb_000059_010 Hb_000059_010 Hb_001102_210--Hb_000059_010 Hb_000340_310 Hb_000340_310 Hb_001102_210--Hb_000340_310 Hb_000815_290 Hb_000815_290 Hb_001102_210--Hb_000815_290 Hb_002078_440--Hb_013405_140 Hb_003783_030 Hb_003783_030 Hb_002078_440--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_002078_440--Hb_011021_040 Hb_002078_440--Hb_000340_310 Hb_002078_440--Hb_000140_360 Hb_002016_080 Hb_002016_080 Hb_013405_140--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_013405_140--Hb_003783_030 Hb_013405_140--Hb_011021_040 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_002026_120 Hb_002026_120 Hb_000140_360--Hb_002026_120 Hb_117807_010 Hb_117807_010 Hb_000140_360--Hb_117807_010 Hb_000140_360--Hb_000815_290 Hb_000059_010--Hb_000815_290 Hb_130719_010 Hb_130719_010 Hb_000059_010--Hb_130719_010 Hb_000059_010--Hb_002078_440 Hb_001377_420 Hb_001377_420 Hb_000059_010--Hb_001377_420 Hb_000771_060 Hb_000771_060 Hb_000059_010--Hb_000771_060 Hb_000111_450 Hb_000111_450 Hb_000340_310--Hb_000111_450 Hb_003994_190 Hb_003994_190 Hb_000340_310--Hb_003994_190 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_000340_310--Hb_000130_110 Hb_000340_310--Hb_013405_140 Hb_000340_310--Hb_002026_120 Hb_000815_290--Hb_000771_060 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_000815_290--Hb_130719_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6824 14.9858 13.3877 28.8727 3.18905 3.30336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0849 71.2954 75.492 27.3951 30.3217

CAGE analysis