Hb_001102_230

Information

Type -
Description -
Location Contig1102: 235930-238440
Sequence    

Annotation

kegg
ID tcc:TCM_032128
description BED zinc finger,hAT family dimerization domain isoform 1
nr
ID XP_012076092.1
description PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
swissprot
ID Q6AVI0
description Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica GN=Os03g0733400 PE=2 SV=1
trembl
ID A0A067KRK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11935 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger bed domain-containing protein ricesleeper 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_230 0.0 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
2 Hb_001960_040 0.1763243558 - - PREDICTED: CTP synthase [Jatropha curcas]
3 Hb_000472_040 0.179812871 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
4 Hb_000300_620 0.1821213963 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
5 Hb_000573_020 0.183845433 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
6 Hb_001357_140 0.1897962804 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000576_010 0.190148999 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
8 Hb_000421_180 0.1914853913 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000317_030 0.1915643739 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
10 Hb_001671_080 0.1926456286 - - amino acid binding protein, putative [Ricinus communis]
11 Hb_001001_030 0.193183601 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
12 Hb_006120_200 0.1935020471 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
13 Hb_001315_020 0.1949176232 - - ring finger protein, putative [Ricinus communis]
14 Hb_002027_300 0.1950493779 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
15 Hb_000676_220 0.1977731539 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_002740_130 0.2039669482 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
17 Hb_002235_400 0.2054888198 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_100506_010 0.205954054 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
19 Hb_004223_130 0.2069805562 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001141_080 0.2074585493 - - PREDICTED: protein RDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_230 Hb_001102_230 Hb_001960_040 Hb_001960_040 Hb_001102_230--Hb_001960_040 Hb_000472_040 Hb_000472_040 Hb_001102_230--Hb_000472_040 Hb_000300_620 Hb_000300_620 Hb_001102_230--Hb_000300_620 Hb_000573_020 Hb_000573_020 Hb_001102_230--Hb_000573_020 Hb_001357_140 Hb_001357_140 Hb_001102_230--Hb_001357_140 Hb_000576_010 Hb_000576_010 Hb_001102_230--Hb_000576_010 Hb_000421_180 Hb_000421_180 Hb_001960_040--Hb_000421_180 Hb_002188_130 Hb_002188_130 Hb_001960_040--Hb_002188_130 Hb_001960_040--Hb_001357_140 Hb_000412_110 Hb_000412_110 Hb_001960_040--Hb_000412_110 Hb_000805_120 Hb_000805_120 Hb_001960_040--Hb_000805_120 Hb_001357_180 Hb_001357_180 Hb_001960_040--Hb_001357_180 Hb_116701_020 Hb_116701_020 Hb_000472_040--Hb_116701_020 Hb_001141_080 Hb_001141_080 Hb_000472_040--Hb_001141_080 Hb_001386_130 Hb_001386_130 Hb_000472_040--Hb_001386_130 Hb_000567_200 Hb_000567_200 Hb_000472_040--Hb_000567_200 Hb_002924_050 Hb_002924_050 Hb_000472_040--Hb_002924_050 Hb_003428_110 Hb_003428_110 Hb_000472_040--Hb_003428_110 Hb_009382_020 Hb_009382_020 Hb_000300_620--Hb_009382_020 Hb_001981_090 Hb_001981_090 Hb_000300_620--Hb_001981_090 Hb_001518_020 Hb_001518_020 Hb_000300_620--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_000300_620--Hb_000809_040 Hb_004223_130 Hb_004223_130 Hb_000300_620--Hb_004223_130 Hb_010710_030 Hb_010710_030 Hb_000300_620--Hb_010710_030 Hb_000009_170 Hb_000009_170 Hb_000573_020--Hb_000009_170 Hb_000436_070 Hb_000436_070 Hb_000573_020--Hb_000436_070 Hb_000620_010 Hb_000620_010 Hb_000573_020--Hb_000620_010 Hb_001604_010 Hb_001604_010 Hb_000573_020--Hb_001604_010 Hb_001001_060 Hb_001001_060 Hb_000573_020--Hb_001001_060 Hb_001771_140 Hb_001771_140 Hb_000573_020--Hb_001771_140 Hb_001357_140--Hb_000421_180 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_003376_040 Hb_003376_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080 Hb_000317_030 Hb_000317_030 Hb_000576_010--Hb_000317_030 Hb_004994_170 Hb_004994_170 Hb_000576_010--Hb_004994_170 Hb_004204_070 Hb_004204_070 Hb_000576_010--Hb_004204_070 Hb_000576_010--Hb_004223_130 Hb_010381_070 Hb_010381_070 Hb_000576_010--Hb_010381_070 Hb_000975_290 Hb_000975_290 Hb_000576_010--Hb_000975_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.386045 0.0442011 0.0496166 0.0397021 0.0645032 0.110091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227753 0.0895808 0.222807 0.107548 0

CAGE analysis