Hb_001102_250

Information

Type -
Description -
Location Contig1102: 242304-245758
Sequence    

Annotation

kegg
ID tcc:TCM_032113
description RING/U-box superfamily protein isoform 1
nr
ID XP_012077763.1
description PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
swissprot
ID F4HRI2
description E3 ubiquitin-protein ligase CCNB1IP1 homolog OS=Arabidopsis thaliana GN=HEI10 PE=2 SV=1
trembl
ID A0A067KLU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12742 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ccnb1ip1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_250 0.0 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
2 Hb_072912_020 0.0819405644 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_003095_070 0.0974950308 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
4 Hb_000544_110 0.097931815 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
5 Hb_005841_040 0.1010937449 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
6 Hb_005137_020 0.1019302914 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
7 Hb_004297_040 0.1042042532 - - acyl CoA reductase [Hevea brasiliensis]
8 Hb_003043_120 0.106824861 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011245_020 0.1090178111 - - Ferrochelatase [Medicago truncatula]
10 Hb_000367_280 0.1090431041 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
11 Hb_005908_040 0.1093238566 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
12 Hb_001268_080 0.1101752369 - - catalytic, putative [Ricinus communis]
13 Hb_010594_030 0.1104644118 - - -
14 Hb_078633_010 0.1124474561 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_001213_120 0.1186532057 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
16 Hb_034585_050 0.1188597809 - - -
17 Hb_002045_230 0.1233964532 - - Ammonium transporter 2 [Theobroma cacao]
18 Hb_006351_110 0.1275235679 - - -
19 Hb_011671_400 0.1281067788 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_012395_210 0.1303335647 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001102_250 Hb_001102_250 Hb_072912_020 Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_005137_020 Hb_005137_020 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_072912_020--Hb_000544_110 Hb_072912_020--Hb_005137_020 Hb_078633_010 Hb_078633_010 Hb_072912_020--Hb_078633_010 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_000788_080 Hb_000788_080 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_003095_070--Hb_072912_020 Hb_000544_110--Hb_005137_020 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_000544_110--Hb_005908_040 Hb_002045_230 Hb_002045_230 Hb_005841_040--Hb_002045_230 Hb_011245_020 Hb_011245_020 Hb_005841_040--Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_005841_040--Hb_003043_120 Hb_000676_240 Hb_000676_240 Hb_005841_040--Hb_000676_240 Hb_002759_240 Hb_002759_240 Hb_005841_040--Hb_002759_240 Hb_005137_020--Hb_078633_010 Hb_005137_020--Hb_005908_040 Hb_005137_020--Hb_004297_040 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_004297_040--Hb_078633_010 Hb_004297_040--Hb_001268_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77116 0.132108 0.380745 0.374468 1.12288 1.73654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80294 13.0847 7.26083 1.12969 0.168388

CAGE analysis