Hb_001102_260

Information

Type -
Description -
Location Contig1102: 252459-252662
Sequence    

Annotation

kegg
ID rcu:RCOM_0216640
description hypothetical protein
nr
ID XP_010112103.1
description hypothetical protein L484_019841 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SK68
description Uncharacterized protein OS=Morus notabilis GN=L484_019841 PE=4 SV=1
Gene Ontology
ID GO:0004812
description methionyl-trna synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_260 0.0 - - hypothetical protein L484_019841 [Morus notabilis]
2 Hb_005738_010 0.180615087 - - -
3 Hb_027420_050 0.191339776 - - -
4 Hb_020805_010 0.1919863702 - - protein with unknown function [Ricinus communis]
5 Hb_008725_150 0.1920052079 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_000264_010 0.1963007364 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
7 Hb_004316_070 0.200024854 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
8 Hb_008643_060 0.2168076595 - - unnamed protein product [Coffea canephora]
9 Hb_010620_010 0.2184147431 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
10 Hb_004767_090 0.2267859707 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
11 Hb_017711_020 0.2277121412 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
12 Hb_002344_090 0.2284351238 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
13 Hb_106321_030 0.2317915598 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
14 Hb_002687_040 0.2354379279 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
15 Hb_000720_070 0.2356228696 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
16 Hb_000125_040 0.2359127743 - - -
17 Hb_000465_170 0.2363426401 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
18 Hb_000021_040 0.2367523859 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
19 Hb_188964_010 0.2387658959 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
20 Hb_000106_040 0.2399860987 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]

Gene co-expression network

sample Hb_001102_260 Hb_001102_260 Hb_005738_010 Hb_005738_010 Hb_001102_260--Hb_005738_010 Hb_027420_050 Hb_027420_050 Hb_001102_260--Hb_027420_050 Hb_020805_010 Hb_020805_010 Hb_001102_260--Hb_020805_010 Hb_008725_150 Hb_008725_150 Hb_001102_260--Hb_008725_150 Hb_000264_010 Hb_000264_010 Hb_001102_260--Hb_000264_010 Hb_004316_070 Hb_004316_070 Hb_001102_260--Hb_004316_070 Hb_004767_090 Hb_004767_090 Hb_005738_010--Hb_004767_090 Hb_000343_190 Hb_000343_190 Hb_005738_010--Hb_000343_190 Hb_005738_010--Hb_000264_010 Hb_008643_060 Hb_008643_060 Hb_005738_010--Hb_008643_060 Hb_002601_120 Hb_002601_120 Hb_005738_010--Hb_002601_120 Hb_017711_020 Hb_017711_020 Hb_005738_010--Hb_017711_020 Hb_003710_040 Hb_003710_040 Hb_027420_050--Hb_003710_040 Hb_000720_070 Hb_000720_070 Hb_027420_050--Hb_000720_070 Hb_027420_050--Hb_000264_010 Hb_000640_200 Hb_000640_200 Hb_027420_050--Hb_000640_200 Hb_010584_010 Hb_010584_010 Hb_027420_050--Hb_010584_010 Hb_057451_010 Hb_057451_010 Hb_027420_050--Hb_057451_010 Hb_000755_080 Hb_000755_080 Hb_020805_010--Hb_000755_080 Hb_020805_010--Hb_000264_010 Hb_020805_010--Hb_000720_070 Hb_000261_520 Hb_000261_520 Hb_020805_010--Hb_000261_520 Hb_020805_010--Hb_027420_050 Hb_000375_030 Hb_000375_030 Hb_020805_010--Hb_000375_030 Hb_008725_150--Hb_004316_070 Hb_106321_030 Hb_106321_030 Hb_008725_150--Hb_106321_030 Hb_004137_060 Hb_004137_060 Hb_008725_150--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_008725_150--Hb_000832_130 Hb_008725_150--Hb_004767_090 Hb_002239_040 Hb_002239_040 Hb_008725_150--Hb_002239_040 Hb_000021_040 Hb_000021_040 Hb_000264_010--Hb_000021_040 Hb_064903_010 Hb_064903_010 Hb_000264_010--Hb_064903_010 Hb_067193_010 Hb_067193_010 Hb_000264_010--Hb_067193_010 Hb_001301_090 Hb_001301_090 Hb_000264_010--Hb_001301_090 Hb_000101_350 Hb_000101_350 Hb_000264_010--Hb_000101_350 Hb_000951_110 Hb_000951_110 Hb_000264_010--Hb_000951_110 Hb_004316_070--Hb_106321_030 Hb_000106_040 Hb_000106_040 Hb_004316_070--Hb_000106_040 Hb_002450_190 Hb_002450_190 Hb_004316_070--Hb_002450_190 Hb_000200_140 Hb_000200_140 Hb_004316_070--Hb_000200_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0826 246.235 40.6811 212.294 515.423 503.676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7261 69.2249 249.028 75.3764 25.7223

CAGE analysis