Hb_001103_020

Information

Type -
Description -
Location Contig1103: 31856-35144
Sequence    

Annotation

kegg
ID sot:102597245
description probable peptide/nitrate transporter At1g22540-like
nr
ID XP_012084632.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
swissprot
ID Q0WP01
description Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana GN=NPF5.10 PE=2 SV=1
trembl
ID A0A067K512
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20272 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03200: 34617-35095 , PASA_asmbl_03201: 32072-50590 , PASA_asmbl_03202: 32072-50590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001103_020 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
2 Hb_003442_100 0.1601867403 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
3 Hb_006446_010 0.1808567977 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000126_110 0.1839859955 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
5 Hb_111051_010 0.220975893 - - Disease resistance protein RGA2, putative [Ricinus communis]
6 Hb_011512_130 0.2226306757 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
7 Hb_001189_110 0.2263351765 - - NAC transcription factor 066 [Jatropha curcas]
8 Hb_005550_010 0.2272117973 - - PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
9 Hb_009193_100 0.2286723794 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
10 Hb_006573_300 0.2320201684 - - ATP binding protein, putative [Ricinus communis]
11 Hb_008468_030 0.2360533689 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
12 Hb_001049_020 0.2378238437 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004899_310 0.2401164273 - - conserved hypothetical protein [Ricinus communis]
14 Hb_116349_040 0.2419244226 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
15 Hb_003327_070 0.2432138726 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
16 Hb_008066_070 0.2433268016 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_015778_030 0.2457782207 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
18 Hb_000983_080 0.245922929 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
19 Hb_005779_030 0.247188707 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
20 Hb_028487_140 0.252819973 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001103_020 Hb_001103_020 Hb_003442_100 Hb_003442_100 Hb_001103_020--Hb_003442_100 Hb_006446_010 Hb_006446_010 Hb_001103_020--Hb_006446_010 Hb_000126_110 Hb_000126_110 Hb_001103_020--Hb_000126_110 Hb_111051_010 Hb_111051_010 Hb_001103_020--Hb_111051_010 Hb_011512_130 Hb_011512_130 Hb_001103_020--Hb_011512_130 Hb_001189_110 Hb_001189_110 Hb_001103_020--Hb_001189_110 Hb_003442_100--Hb_001189_110 Hb_003442_100--Hb_006446_010 Hb_004899_310 Hb_004899_310 Hb_003442_100--Hb_004899_310 Hb_005779_030 Hb_005779_030 Hb_003442_100--Hb_005779_030 Hb_012317_020 Hb_012317_020 Hb_003442_100--Hb_012317_020 Hb_006446_010--Hb_000126_110 Hb_000983_080 Hb_000983_080 Hb_006446_010--Hb_000983_080 Hb_006788_140 Hb_006788_140 Hb_006446_010--Hb_006788_140 Hb_006446_010--Hb_001189_110 Hb_007904_130 Hb_007904_130 Hb_000126_110--Hb_007904_130 Hb_009193_100 Hb_009193_100 Hb_000126_110--Hb_009193_100 Hb_000126_110--Hb_001189_110 Hb_000126_110--Hb_011512_130 Hb_005550_010 Hb_005550_010 Hb_111051_010--Hb_005550_010 Hb_000120_230 Hb_000120_230 Hb_111051_010--Hb_000120_230 Hb_008468_030 Hb_008468_030 Hb_111051_010--Hb_008468_030 Hb_041201_010 Hb_041201_010 Hb_111051_010--Hb_041201_010 Hb_006441_020 Hb_006441_020 Hb_111051_010--Hb_006441_020 Hb_013057_020 Hb_013057_020 Hb_111051_010--Hb_013057_020 Hb_011512_130--Hb_005550_010 Hb_008066_070 Hb_008066_070 Hb_011512_130--Hb_008066_070 Hb_002631_200 Hb_002631_200 Hb_011512_130--Hb_002631_200 Hb_002217_220 Hb_002217_220 Hb_011512_130--Hb_002217_220 Hb_005433_060 Hb_005433_060 Hb_011512_130--Hb_005433_060 Hb_008221_170 Hb_008221_170 Hb_011512_130--Hb_008221_170 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000426_030 Hb_000426_030 Hb_001189_110--Hb_000426_030 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_000302_260 Hb_000302_260 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.766617 5.40806 0.22713 5.46459 0.145897 0.453949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8416 0.952977 4.13236 4.4342 0.386976

CAGE analysis