Hb_001103_060

Information

Type -
Description -
Location Contig1103: 94964-110546
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10860g
description POPTRDRAFT_914816; proton-dependent oligopeptide transport family protein
nr
ID XP_002325969.2
description proton-dependent oligopeptide transport family protein [Populus trichocarpa]
swissprot
ID Q0WP01
description Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana GN=NPF5.10 PE=2 SV=1
trembl
ID B9IQF1
description Proton-dependent oligopeptide transport family protein OS=Populus trichocarpa GN=POPTR_0019s10860g PE=3 SV=2
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03203: 94931-95365 , PASA_asmbl_03204: 96475-97914 , PASA_asmbl_03205: 101751-110479 , PASA_asmbl_03207: 107972-108219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001103_060 0.0 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
2 Hb_000094_150 0.1181874388 - - -
3 Hb_002383_050 0.121241669 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
4 Hb_001059_060 0.1320847341 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
5 Hb_004577_010 0.1363874353 - - PREDICTED: transmembrane protein 45A [Prunus mume]
6 Hb_004162_220 0.1395333245 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
7 Hb_002010_090 0.1401149434 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_000594_060 0.1428049072 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
9 Hb_011188_010 0.1460479686 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
10 Hb_000260_160 0.1495711359 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
11 Hb_004052_110 0.1498234191 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
12 Hb_009078_020 0.1506415071 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_003058_140 0.1527850265 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001998_210 0.1549834587 - - unnamed protein product [Coffea canephora]
15 Hb_000979_140 0.1558892327 - - kinase family protein [Populus trichocarpa]
16 Hb_001404_090 0.1558959973 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
17 Hb_029695_120 0.1568708525 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
18 Hb_000487_370 0.1581618876 - - -
19 Hb_013968_010 0.1587522259 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
20 Hb_001439_070 0.1590900365 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001103_060 Hb_001103_060 Hb_000094_150 Hb_000094_150 Hb_001103_060--Hb_000094_150 Hb_002383_050 Hb_002383_050 Hb_001103_060--Hb_002383_050 Hb_001059_060 Hb_001059_060 Hb_001103_060--Hb_001059_060 Hb_004577_010 Hb_004577_010 Hb_001103_060--Hb_004577_010 Hb_004162_220 Hb_004162_220 Hb_001103_060--Hb_004162_220 Hb_002010_090 Hb_002010_090 Hb_001103_060--Hb_002010_090 Hb_000094_150--Hb_002010_090 Hb_000256_160 Hb_000256_160 Hb_000094_150--Hb_000256_160 Hb_000094_150--Hb_001059_060 Hb_000261_310 Hb_000261_310 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_013968_010 Hb_013968_010 Hb_002383_050--Hb_013968_010 Hb_007290_070 Hb_007290_070 Hb_002383_050--Hb_007290_070 Hb_000260_160 Hb_000260_160 Hb_002383_050--Hb_000260_160 Hb_001499_070 Hb_001499_070 Hb_002383_050--Hb_001499_070 Hb_002383_050--Hb_000094_150 Hb_001514_240 Hb_001514_240 Hb_002383_050--Hb_001514_240 Hb_009078_020 Hb_009078_020 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_004577_010--Hb_011188_010 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_006816_010 Hb_006816_010 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_000230_530 Hb_000230_530 Hb_002010_090--Hb_000230_530 Hb_002010_090--Hb_006816_010 Hb_002010_090--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_002010_090--Hb_000510_190 Hb_002010_090--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41235 12.9014 19.9466 12.0168 4.19853 1.92568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98447 3.23639 0.865118 9.93579 16.0226

CAGE analysis