Hb_001103_070

Information

Type -
Description -
Location Contig1103: 125655-128670
Sequence    

Annotation

kegg
ID rcu:RCOM_1332620
description Patellin-3, putative
nr
ID XP_002521801.1
description Patellin-3, putative [Ricinus communis]
swissprot
ID Q9M0R2
description Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2
trembl
ID B9S732
description Patellin-3, putative OS=Ricinus communis GN=RCOM_1332620 PE=4 SV=1
Gene Ontology
ID GO:0005622
description patellin-5 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03209: 125846-128610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001103_070 0.0 - - Patellin-3, putative [Ricinus communis]
2 Hb_000732_240 0.175660222 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
3 Hb_001004_120 0.1760622498 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
4 Hb_000099_190 0.1762000915 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
5 Hb_145317_010 0.1813085263 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
6 Hb_160405_010 0.1849668685 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_003082_040 0.1892691136 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
8 Hb_154538_010 0.1933041509 - - -
9 Hb_070541_030 0.1938075721 - - -
10 Hb_030312_010 0.1953483505 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000342_140 0.1984849573 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
12 Hb_035761_010 0.2035804232 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
13 Hb_003060_050 0.205315725 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
14 Hb_003854_020 0.2110188016 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
15 Hb_010812_110 0.2114264563 - - putative plant disease resistance family protein [Populus trichocarpa]
16 Hb_002374_550 0.2132039214 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
17 Hb_006483_030 0.2134373834 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_106136_010 0.2180938866 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_005656_160 0.2182914245 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
20 Hb_014497_040 0.219040032 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001103_070 Hb_001103_070 Hb_000732_240 Hb_000732_240 Hb_001103_070--Hb_000732_240 Hb_001004_120 Hb_001004_120 Hb_001103_070--Hb_001004_120 Hb_000099_190 Hb_000099_190 Hb_001103_070--Hb_000099_190 Hb_145317_010 Hb_145317_010 Hb_001103_070--Hb_145317_010 Hb_160405_010 Hb_160405_010 Hb_001103_070--Hb_160405_010 Hb_003082_040 Hb_003082_040 Hb_001103_070--Hb_003082_040 Hb_000732_240--Hb_000099_190 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_035761_010 Hb_035761_010 Hb_000732_240--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000732_240--Hb_049915_010 Hb_017159_010 Hb_017159_010 Hb_000732_240--Hb_017159_010 Hb_001357_280 Hb_001357_280 Hb_000732_240--Hb_001357_280 Hb_000500_080 Hb_000500_080 Hb_001004_120--Hb_000500_080 Hb_000649_270 Hb_000649_270 Hb_001004_120--Hb_000649_270 Hb_012353_040 Hb_012353_040 Hb_001004_120--Hb_012353_040 Hb_001004_120--Hb_003082_040 Hb_150346_010 Hb_150346_010 Hb_001004_120--Hb_150346_010 Hb_014497_040 Hb_014497_040 Hb_001004_120--Hb_014497_040 Hb_000099_190--Hb_035761_010 Hb_000099_190--Hb_049915_010 Hb_000438_150 Hb_000438_150 Hb_000099_190--Hb_000438_150 Hb_000914_050 Hb_000914_050 Hb_000099_190--Hb_000914_050 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_004449_090 Hb_004449_090 Hb_160405_010--Hb_004449_090 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001357_030 Hb_001357_030 Hb_160405_010--Hb_001357_030 Hb_001178_080 Hb_001178_080 Hb_160405_010--Hb_001178_080 Hb_002213_040 Hb_002213_040 Hb_003082_040--Hb_002213_040 Hb_002685_030 Hb_002685_030 Hb_003082_040--Hb_002685_030 Hb_030312_010 Hb_030312_010 Hb_003082_040--Hb_030312_010 Hb_003506_020 Hb_003506_020 Hb_003082_040--Hb_003506_020 Hb_000342_140 Hb_000342_140 Hb_003082_040--Hb_000342_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3881 68.0061 19.1239 114.178 31.0906 28.4244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.740763 0.16267 0.129274 19.2036 13.694

CAGE analysis