Hb_001103_090

Information

Type -
Description -
Location Contig1103: 141696-144279
Sequence    

Annotation

kegg
ID rcu:RCOM_1332490
description Patellin-5, putative
nr
ID XP_011031504.1
description PREDICTED: patellin-3 [Populus euphratica]
swissprot
ID Q56Z59
description Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2
trembl
ID A0A067JTX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20274 PE=4 SV=1
Gene Ontology
ID GO:0005622
description patellin-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03210: 141745-144214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001103_090 0.0 - - PREDICTED: patellin-3 [Populus euphratica]
2 Hb_001675_320 0.0722330502 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
3 Hb_001226_110 0.0753642368 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
4 Hb_000205_280 0.0810487306 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
5 Hb_000020_160 0.0818095489 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
6 Hb_001259_120 0.088314671 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
7 Hb_000260_780 0.0890237655 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
8 Hb_001558_040 0.0900427968 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
9 Hb_028077_020 0.0907706412 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000358_100 0.0909252961 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
11 Hb_000359_190 0.0921524289 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
12 Hb_000085_260 0.0922771103 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
13 Hb_000098_050 0.0942733327 - - BnaCnng11900D [Brassica napus]
14 Hb_000705_180 0.0967746551 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
15 Hb_002005_030 0.0969992178 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
16 Hb_044486_020 0.0983407525 - - CASTOR protein [Glycine max]
17 Hb_000580_030 0.0988814462 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
18 Hb_001159_030 0.099864456 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
19 Hb_005000_090 0.1032554364 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
20 Hb_000635_200 0.1047652681 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]

Gene co-expression network

sample Hb_001103_090 Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_001878_060 Hb_001878_060 Hb_001675_320--Hb_001878_060 Hb_001675_320--Hb_000205_280 Hb_003849_220 Hb_003849_220 Hb_001675_320--Hb_003849_220 Hb_028077_020 Hb_028077_020 Hb_001675_320--Hb_028077_020 Hb_003599_030 Hb_003599_030 Hb_001675_320--Hb_003599_030 Hb_005649_080 Hb_005649_080 Hb_001226_110--Hb_005649_080 Hb_009476_120 Hb_009476_120 Hb_001226_110--Hb_009476_120 Hb_000358_220 Hb_000358_220 Hb_001226_110--Hb_000358_220 Hb_170077_010 Hb_170077_010 Hb_001226_110--Hb_170077_010 Hb_000358_100 Hb_000358_100 Hb_001226_110--Hb_000358_100 Hb_000205_280--Hb_000260_780 Hb_001159_030 Hb_001159_030 Hb_000205_280--Hb_001159_030 Hb_158845_060 Hb_158845_060 Hb_000205_280--Hb_158845_060 Hb_000784_080 Hb_000784_080 Hb_000205_280--Hb_000784_080 Hb_000054_040 Hb_000054_040 Hb_000205_280--Hb_000054_040 Hb_000020_160--Hb_000358_100 Hb_000020_160--Hb_000358_220 Hb_044486_020 Hb_044486_020 Hb_000020_160--Hb_044486_020 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000172_340 Hb_000172_340 Hb_000020_160--Hb_000172_340 Hb_000020_160--Hb_170077_010 Hb_000010_420 Hb_000010_420 Hb_001259_120--Hb_000010_420 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_004645_070 Hb_004645_070 Hb_001259_120--Hb_004645_070 Hb_001257_100 Hb_001257_100 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000260_780--Hb_000358_100 Hb_000580_050 Hb_000580_050 Hb_000260_780--Hb_000580_050 Hb_000260_780--Hb_000020_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5087 58.2285 33.052 68.7891 28.1864 22.6332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57764 8.14533 12.7186 38.9542 37.8211

CAGE analysis