Hb_001104_020

Information

Type -
Description -
Location Contig1104: 40169-42838
Sequence    

Annotation

kegg
ID rcu:RCOM_0381660
description DNA binding protein, putative
nr
ID XP_002528575.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID B9SRF6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0381660 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03231: 40354-42339 , PASA_asmbl_03232: 41709-42002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_020 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000732_220 0.0381085773 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
3 Hb_093218_010 0.0816497066 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
4 Hb_000152_120 0.0854865419 - - alpha-l-fucosidase, putative [Ricinus communis]
5 Hb_005892_040 0.0896831248 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
6 Hb_000951_090 0.0903797228 - - Oligopeptide transporter, putative [Ricinus communis]
7 Hb_019570_010 0.093456123 - - lyase, putative [Ricinus communis]
8 Hb_000941_010 0.0955099184 - - hypothetical protein RCOM_0504460 [Ricinus communis]
9 Hb_004162_320 0.0968995836 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
10 Hb_002805_180 0.0970789385 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000714_060 0.0975552916 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
12 Hb_003506_010 0.1005466427 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
13 Hb_015001_030 0.1037822114 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
14 Hb_000359_180 0.1072431129 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001135_010 0.1093427909 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
16 Hb_002045_010 0.1117833169 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
17 Hb_004592_010 0.1120406707 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
18 Hb_001437_260 0.113457687 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
19 Hb_002918_120 0.1138583075 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000008_150 0.1141376235 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_020 Hb_001104_020 Hb_000732_220 Hb_000732_220 Hb_001104_020--Hb_000732_220 Hb_093218_010 Hb_093218_010 Hb_001104_020--Hb_093218_010 Hb_000152_120 Hb_000152_120 Hb_001104_020--Hb_000152_120 Hb_005892_040 Hb_005892_040 Hb_001104_020--Hb_005892_040 Hb_000951_090 Hb_000951_090 Hb_001104_020--Hb_000951_090 Hb_019570_010 Hb_019570_010 Hb_001104_020--Hb_019570_010 Hb_000732_220--Hb_019570_010 Hb_000732_220--Hb_000152_120 Hb_000359_180 Hb_000359_180 Hb_000732_220--Hb_000359_180 Hb_002805_180 Hb_002805_180 Hb_000732_220--Hb_002805_180 Hb_004592_010 Hb_004592_010 Hb_000732_220--Hb_004592_010 Hb_000714_060 Hb_000714_060 Hb_093218_010--Hb_000714_060 Hb_032260_060 Hb_032260_060 Hb_093218_010--Hb_032260_060 Hb_093218_010--Hb_000951_090 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_093218_010--Hb_005892_040 Hb_001244_070 Hb_001244_070 Hb_000152_120--Hb_001244_070 Hb_000152_120--Hb_000951_090 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070 Hb_000337_030 Hb_000337_030 Hb_000152_120--Hb_000337_030 Hb_003506_010 Hb_003506_010 Hb_005892_040--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_005892_040--Hb_004162_320 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_001405_040 Hb_001405_040 Hb_005892_040--Hb_001405_040 Hb_005892_040--Hb_020805_070 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_000951_090--Hb_000714_060 Hb_000951_090--Hb_002805_180 Hb_019570_010--Hb_004592_010 Hb_019570_010--Hb_002805_180 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.775523 5.6874 4.53964 0.0116972 0.0218936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.87239 3.05214

CAGE analysis