Hb_001104_030

Information

Type -
Description -
Location Contig1104: 42045-48473
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25040g
description hypothetical protein
nr
ID XP_011024399.1
description PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9P944
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25040g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03233: 42365-42753 , PASA_asmbl_03234: 48824-49518
cDNA
(Sanger)
(ID:Location)		 009_C01r.ab1: 48824-49516

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_030 0.0 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
2 Hb_004375_090 0.0032631395 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
3 Hb_141016_010 0.0066878404 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
4 Hb_009711_060 0.0069438748 - - -
5 Hb_151697_010 0.0072053892 - - clathrin assembly protein, putative [Ricinus communis]
6 Hb_183658_010 0.0083097689 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_002106_020 0.0112640016 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
8 Hb_000556_210 0.01385012 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
9 Hb_006469_100 0.0151735259 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
10 Hb_000574_060 0.0167186559 - - hypothetical protein F775_19731 [Aegilops tauschii]
11 Hb_027802_030 0.0177816021 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
12 Hb_002284_140 0.0189485587 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
13 Hb_004092_020 0.0193456106 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
14 Hb_168078_010 0.0204739028 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
15 Hb_003363_100 0.0235016054 - - -
16 Hb_000506_060 0.0258620529 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
17 Hb_000053_140 0.0289199519 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007524_020 0.0294642909 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
19 Hb_001300_110 0.0316825474 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
20 Hb_000243_270 0.0327130318 - - Pectinesterase-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001104_030 Hb_001104_030 Hb_004375_090 Hb_004375_090 Hb_001104_030--Hb_004375_090 Hb_141016_010 Hb_141016_010 Hb_001104_030--Hb_141016_010 Hb_009711_060 Hb_009711_060 Hb_001104_030--Hb_009711_060 Hb_151697_010 Hb_151697_010 Hb_001104_030--Hb_151697_010 Hb_183658_010 Hb_183658_010 Hb_001104_030--Hb_183658_010 Hb_002106_020 Hb_002106_020 Hb_001104_030--Hb_002106_020 Hb_004375_090--Hb_141016_010 Hb_004375_090--Hb_009711_060 Hb_004375_090--Hb_151697_010 Hb_004375_090--Hb_183658_010 Hb_006469_100 Hb_006469_100 Hb_004375_090--Hb_006469_100 Hb_141016_010--Hb_006469_100 Hb_000574_060 Hb_000574_060 Hb_141016_010--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_141016_010--Hb_027802_030 Hb_141016_010--Hb_009711_060 Hb_009711_060--Hb_151697_010 Hb_009711_060--Hb_183658_010 Hb_009711_060--Hb_002106_020 Hb_000556_210 Hb_000556_210 Hb_009711_060--Hb_000556_210 Hb_151697_010--Hb_183658_010 Hb_151697_010--Hb_002106_020 Hb_151697_010--Hb_000556_210 Hb_183658_010--Hb_002106_020 Hb_183658_010--Hb_000556_210 Hb_002284_140 Hb_002284_140 Hb_183658_010--Hb_002284_140 Hb_002106_020--Hb_000556_210 Hb_002106_020--Hb_002284_140 Hb_004092_020 Hb_004092_020 Hb_002106_020--Hb_004092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0417698 0.029755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis