Hb_001104_050

Information

Type -
Description -
Location Contig1104: 56786-65114
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_050 0.0 - - -
2 Hb_001798_020 0.1272371748 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
3 Hb_001391_120 0.2226569885 - - Acetyl esterase, putative [Ricinus communis]
4 Hb_012368_070 0.2894822242 - - RNA binding protein, putative [Ricinus communis]
5 Hb_006503_010 0.2975594743 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_000853_040 0.3123933184 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001470_070 0.3156757089 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_009813_080 0.3213695293 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
9 Hb_015909_010 0.3213749518 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002311_170 0.3224165632 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
11 Hb_021346_040 0.3271170473 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
12 Hb_167452_010 0.3322818258 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
13 Hb_009775_040 0.3383766092 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
14 Hb_024898_020 0.3515500031 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_003626_010 0.3519190743 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
16 Hb_034904_010 0.3539566768 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
17 Hb_012636_010 0.3552498175 - - -
18 Hb_003052_230 0.3560566498 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008759_020 0.3593375101 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
20 Hb_005144_190 0.3622260828 - - hypothetical protein F383_09558 [Gossypium arboreum]

Gene co-expression network

sample Hb_001104_050 Hb_001104_050 Hb_001798_020 Hb_001798_020 Hb_001104_050--Hb_001798_020 Hb_001391_120 Hb_001391_120 Hb_001104_050--Hb_001391_120 Hb_012368_070 Hb_012368_070 Hb_001104_050--Hb_012368_070 Hb_006503_010 Hb_006503_010 Hb_001104_050--Hb_006503_010 Hb_000853_040 Hb_000853_040 Hb_001104_050--Hb_000853_040 Hb_001470_070 Hb_001470_070 Hb_001104_050--Hb_001470_070 Hb_001798_020--Hb_001391_120 Hb_001798_020--Hb_012368_070 Hb_008479_020 Hb_008479_020 Hb_001798_020--Hb_008479_020 Hb_003052_230 Hb_003052_230 Hb_001798_020--Hb_003052_230 Hb_024898_020 Hb_024898_020 Hb_001798_020--Hb_024898_020 Hb_002097_020 Hb_002097_020 Hb_001391_120--Hb_002097_020 Hb_020178_010 Hb_020178_010 Hb_001391_120--Hb_020178_010 Hb_009775_040 Hb_009775_040 Hb_001391_120--Hb_009775_040 Hb_015909_010 Hb_015909_010 Hb_001391_120--Hb_015909_010 Hb_007849_010 Hb_007849_010 Hb_012368_070--Hb_007849_010 Hb_005144_190 Hb_005144_190 Hb_012368_070--Hb_005144_190 Hb_007317_080 Hb_007317_080 Hb_012368_070--Hb_007317_080 Hb_000694_060 Hb_000694_060 Hb_012368_070--Hb_000694_060 Hb_000216_010 Hb_000216_010 Hb_006503_010--Hb_000216_010 Hb_006503_010--Hb_009775_040 Hb_143629_030 Hb_143629_030 Hb_006503_010--Hb_143629_030 Hb_006503_010--Hb_001470_070 Hb_002918_130 Hb_002918_130 Hb_006503_010--Hb_002918_130 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200 Hb_167452_010 Hb_167452_010 Hb_000853_040--Hb_167452_010 Hb_021346_040 Hb_021346_040 Hb_000853_040--Hb_021346_040 Hb_000392_460 Hb_000392_460 Hb_000853_040--Hb_000392_460 Hb_083822_010 Hb_083822_010 Hb_000853_040--Hb_083822_010 Hb_003938_030 Hb_003938_030 Hb_000853_040--Hb_003938_030 Hb_001470_070--Hb_002675_200 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_001470_070--Hb_005144_190 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0109284 0.0103626 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0236611 0 0.00944042 0

CAGE analysis