Hb_001104_060

Information

Type -
Description -
Location Contig1104: 78080-82050
Sequence    

Annotation

kegg
ID tcc:TCM_022423
description Nucleotide-diphospho-sugar transferases superfamily protein isoform 1
nr
ID XP_012066505.1
description PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
swissprot
ID Q9LZR3
description Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1
trembl
ID A0A067LFA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23699 PE=4 SV=1
Gene Ontology
ID GO:0047259
description glucomannan 4-beta-mannosyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03235: 77591-77893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_060 0.0 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
2 Hb_000531_030 0.0539067444 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011224_070 0.0690953282 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
4 Hb_003376_060 0.0722801413 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
5 Hb_001456_030 0.0737100862 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
6 Hb_000699_220 0.0740098424 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
7 Hb_000227_360 0.0742542642 - - PREDICTED: mavicyanin [Jatropha curcas]
8 Hb_001511_220 0.0764249484 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
9 Hb_004650_120 0.0766482593 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_004020_030 0.0783721398 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
11 Hb_006717_060 0.0824261025 - - PREDICTED: peroxidase 42 [Jatropha curcas]
12 Hb_000336_120 0.0838919718 - - PREDICTED: mavicyanin [Populus euphratica]
13 Hb_108090_010 0.0869882024 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004225_120 0.088697971 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
15 Hb_135052_010 0.0895140208 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_005616_020 0.0896499065 - - kinase, putative [Ricinus communis]
17 Hb_005440_040 0.0918996235 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
18 Hb_012114_090 0.0933900117 - - tubulin beta chain, putative [Ricinus communis]
19 Hb_001349_040 0.0948322347 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
20 Hb_000009_280 0.0966217571 - - Calmodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001104_060 Hb_001104_060 Hb_000531_030 Hb_000531_030 Hb_001104_060--Hb_000531_030 Hb_011224_070 Hb_011224_070 Hb_001104_060--Hb_011224_070 Hb_003376_060 Hb_003376_060 Hb_001104_060--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_001104_060--Hb_001456_030 Hb_000699_220 Hb_000699_220 Hb_001104_060--Hb_000699_220 Hb_000227_360 Hb_000227_360 Hb_001104_060--Hb_000227_360 Hb_005440_040 Hb_005440_040 Hb_000531_030--Hb_005440_040 Hb_000531_030--Hb_000227_360 Hb_009151_010 Hb_009151_010 Hb_000531_030--Hb_009151_010 Hb_000531_030--Hb_001456_030 Hb_005116_150 Hb_005116_150 Hb_000531_030--Hb_005116_150 Hb_003747_160 Hb_003747_160 Hb_011224_070--Hb_003747_160 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_011224_070--Hb_005614_020 Hb_003376_060--Hb_001456_030 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_000964_080 Hb_000964_080 Hb_003376_060--Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_003376_060--Hb_000413_030 Hb_003376_060--Hb_003747_160 Hb_001456_030--Hb_005616_020 Hb_001456_030--Hb_000227_360 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001456_030--Hb_000964_080 Hb_006717_060 Hb_006717_060 Hb_000699_220--Hb_006717_060 Hb_012114_090 Hb_012114_090 Hb_000699_220--Hb_012114_090 Hb_000497_030 Hb_000497_030 Hb_000699_220--Hb_000497_030 Hb_001349_040 Hb_001349_040 Hb_000699_220--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_000699_220--Hb_000336_120 Hb_000699_220--Hb_005616_020 Hb_108090_010 Hb_108090_010 Hb_000227_360--Hb_108090_010 Hb_000227_360--Hb_005440_040 Hb_003858_010 Hb_003858_010 Hb_000227_360--Hb_003858_010 Hb_011344_040 Hb_011344_040 Hb_000227_360--Hb_011344_040 Hb_001357_290 Hb_001357_290 Hb_000227_360--Hb_001357_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.23402 14.4156 90.6631 0.0482532 0.0677671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.718736 36.8218

CAGE analysis