Hb_001104_080

Information

Type -
Description -
Location Contig1104: 88648-89340
Sequence    

Annotation

kegg
ID rcu:RCOM_0382010
description peroxiredoxin, putative (EC:1.11.1.15)
nr
ID XP_002528579.1
description peroxiredoxin, putative [Ricinus communis]
swissprot
ID Q949U7
description Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2
trembl
ID B9SRG0
description Peroxiredoxin, putative OS=Ricinus communis GN=RCOM_0382010 PE=4 SV=1
Gene Ontology
ID GO:0016491
description peroxiredoxin-2e- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 018_P12.ab1: 88735-89480

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_080 0.0 - - peroxiredoxin, putative [Ricinus communis]
2 Hb_000825_010 0.0291757263 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
3 Hb_032631_060 0.0396429324 - - Myosin heavy chain, putative [Ricinus communis]
4 Hb_000923_030 0.0399876409 - - F-box family protein [Populus trichocarpa]
5 Hb_000805_080 0.0497420389 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
6 Hb_007559_020 0.0525606302 - - peptidylprolyl isomerase, putative [Ricinus communis]
7 Hb_000010_380 0.056940524 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
8 Hb_016334_010 0.0571986274 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
9 Hb_004116_030 0.057244612 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
10 Hb_132840_050 0.0575098021 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
11 Hb_097940_010 0.0586519117 - - pollen protein Ole E I-like protein [Medicago truncatula]
12 Hb_001046_060 0.0598220231 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
13 Hb_107748_010 0.060157427 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
14 Hb_005605_020 0.060727751 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
15 Hb_003653_030 0.0621310744 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000251_160 0.0630594139 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_011068_010 0.0631771807 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
18 Hb_001038_020 0.063275388 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
19 Hb_003337_080 0.0634298111 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
20 Hb_001287_070 0.0643927854 - - latex plastidic aldolase-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001104_080 Hb_001104_080 Hb_000825_010 Hb_000825_010 Hb_001104_080--Hb_000825_010 Hb_032631_060 Hb_032631_060 Hb_001104_080--Hb_032631_060 Hb_000923_030 Hb_000923_030 Hb_001104_080--Hb_000923_030 Hb_000805_080 Hb_000805_080 Hb_001104_080--Hb_000805_080 Hb_007559_020 Hb_007559_020 Hb_001104_080--Hb_007559_020 Hb_000010_380 Hb_000010_380 Hb_001104_080--Hb_000010_380 Hb_000825_010--Hb_000923_030 Hb_000251_160 Hb_000251_160 Hb_000825_010--Hb_000251_160 Hb_000825_010--Hb_007559_020 Hb_132840_050 Hb_132840_050 Hb_000825_010--Hb_132840_050 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020 Hb_032631_060--Hb_000010_380 Hb_004116_030 Hb_004116_030 Hb_032631_060--Hb_004116_030 Hb_032631_060--Hb_000805_080 Hb_032631_060--Hb_000923_030 Hb_003653_030 Hb_003653_030 Hb_032631_060--Hb_003653_030 Hb_003090_050 Hb_003090_050 Hb_000923_030--Hb_003090_050 Hb_001287_070 Hb_001287_070 Hb_000923_030--Hb_001287_070 Hb_000923_030--Hb_000805_080 Hb_008748_050 Hb_008748_050 Hb_000923_030--Hb_008748_050 Hb_000805_080--Hb_000010_380 Hb_001046_060 Hb_001046_060 Hb_000805_080--Hb_001046_060 Hb_003337_080 Hb_003337_080 Hb_000805_080--Hb_003337_080 Hb_011068_010 Hb_011068_010 Hb_000805_080--Hb_011068_010 Hb_000805_080--Hb_005605_020 Hb_000805_080--Hb_001287_070 Hb_097940_010 Hb_097940_010 Hb_007559_020--Hb_097940_010 Hb_000139_010 Hb_000139_010 Hb_007559_020--Hb_000139_010 Hb_001279_380 Hb_001279_380 Hb_007559_020--Hb_001279_380 Hb_027403_010 Hb_027403_010 Hb_007559_020--Hb_027403_010 Hb_008566_060 Hb_008566_060 Hb_007559_020--Hb_008566_060 Hb_000010_380--Hb_001046_060 Hb_000010_380--Hb_001287_070 Hb_000010_380--Hb_011068_010 Hb_000010_380--Hb_003337_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03141 129.475 32.305 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246141 0.386995 0 0.44633 384.254

CAGE analysis