Hb_001104_110

Information

Type -
Description -
Location Contig1104: 103598-106260
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11790g
description hypothetical protein
nr
ID XP_011018873.1
description PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
swissprot
ID Q9FMY5
description Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=1
trembl
ID U5G9Z3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s11790g PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af small subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03239: 103632-106518 , PASA_asmbl_03242: 105729-105871
cDNA
(Sanger)
(ID:Location)		 011_C20.ab1: 103618-105208 , 020_M02.ab1: 103632-105176 , 023_N17.ab1: 103632-104691 , 025_P02.ab1: 103632-105181 , 034_M07.ab1: 103630-105161 , 040_I11.ab1: 103632-105178

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_110 0.0 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
2 Hb_002641_030 0.0941048991 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
3 Hb_004934_050 0.0971265426 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
4 Hb_016734_060 0.0985075447 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
5 Hb_000631_120 0.1018478246 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
6 Hb_049436_010 0.1033848471 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
7 Hb_001031_090 0.1041472134 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
8 Hb_000920_300 0.1047041416 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
9 Hb_000565_040 0.1053569696 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_001123_050 0.1072147474 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000008_420 0.1076330151 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
12 Hb_003849_240 0.1076478329 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_002217_430 0.1080904788 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
14 Hb_000107_660 0.1082729127 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_007054_040 0.1099449333 - - PREDICTED: protein RST1 [Jatropha curcas]
16 Hb_001157_160 0.1100450302 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
17 Hb_002005_090 0.1114401554 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002016_090 0.1127302604 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
19 Hb_005048_100 0.1127655435 - - secretory carrier membrane protein, putative [Ricinus communis]
20 Hb_000862_040 0.112835169 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001104_110 Hb_001104_110 Hb_002641_030 Hb_002641_030 Hb_001104_110--Hb_002641_030 Hb_004934_050 Hb_004934_050 Hb_001104_110--Hb_004934_050 Hb_016734_060 Hb_016734_060 Hb_001104_110--Hb_016734_060 Hb_000631_120 Hb_000631_120 Hb_001104_110--Hb_000631_120 Hb_049436_010 Hb_049436_010 Hb_001104_110--Hb_049436_010 Hb_001031_090 Hb_001031_090 Hb_001104_110--Hb_001031_090 Hb_000920_300 Hb_000920_300 Hb_002641_030--Hb_000920_300 Hb_002374_010 Hb_002374_010 Hb_002641_030--Hb_002374_010 Hb_011537_050 Hb_011537_050 Hb_002641_030--Hb_011537_050 Hb_003529_170 Hb_003529_170 Hb_002641_030--Hb_003529_170 Hb_001723_020 Hb_001723_020 Hb_002641_030--Hb_001723_020 Hb_033642_090 Hb_033642_090 Hb_002641_030--Hb_033642_090 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_004934_050--Hb_000920_300 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_002456_010 Hb_002456_010 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050 Hb_016734_060--Hb_001031_090 Hb_002046_010 Hb_002046_010 Hb_016734_060--Hb_002046_010 Hb_002217_430 Hb_002217_430 Hb_016734_060--Hb_002217_430 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_002805_210 Hb_002805_210 Hb_016734_060--Hb_002805_210 Hb_027472_220 Hb_027472_220 Hb_016734_060--Hb_027472_220 Hb_000940_200 Hb_000940_200 Hb_000631_120--Hb_000940_200 Hb_000862_040 Hb_000862_040 Hb_000631_120--Hb_000862_040 Hb_007054_040 Hb_007054_040 Hb_000631_120--Hb_007054_040 Hb_001935_140 Hb_001935_140 Hb_000631_120--Hb_001935_140 Hb_000363_120 Hb_000363_120 Hb_000631_120--Hb_000363_120 Hb_001862_110 Hb_001862_110 Hb_000631_120--Hb_001862_110 Hb_049436_010--Hb_001031_090 Hb_049436_010--Hb_004934_050 Hb_000905_170 Hb_000905_170 Hb_049436_010--Hb_000905_170 Hb_049436_010--Hb_000920_300 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001031_090--Hb_008948_140 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2226 38.2668 18.4934 13.3237 17.7787 13.6037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4752 20.8106 11.2397 39.5721 15.1966

CAGE analysis