Hb_001104_120

Information

Type -
Description -
Location Contig1104: 107038-109491
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03243: 107125-109491 , PASA_asmbl_03244: 107866-108057
cDNA
(Sanger)
(ID:Location)		 020_G22.ab1: 107127-109491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_120 0.0 - - -
2 Hb_000563_590 0.0681190453 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
3 Hb_000061_160 0.0929913054 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
4 Hb_007441_180 0.0939739114 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001804_040 0.0945245141 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001621_180 0.096558791 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
7 Hb_001454_330 0.0966353563 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
8 Hb_011139_020 0.0982186769 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
9 Hb_000152_430 0.1006931408 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
10 Hb_000190_060 0.1052086127 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
11 Hb_011609_180 0.1052296001 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
12 Hb_000417_110 0.1061411133 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
13 Hb_000089_130 0.1063156907 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
14 Hb_004410_010 0.1071671002 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
15 Hb_009252_130 0.1073060075 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
16 Hb_001035_030 0.107354118 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
17 Hb_000085_200 0.1079447254 - - ATP synthase subunit H protein [Hevea brasiliensis]
18 Hb_000634_050 0.1096813903 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
19 Hb_004102_190 0.109912263 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
20 Hb_002293_030 0.1108176225 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]

Gene co-expression network

sample Hb_001104_120 Hb_001104_120 Hb_000563_590 Hb_000563_590 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_001104_120--Hb_007441_180 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001621_180 Hb_001621_180 Hb_001104_120--Hb_001621_180 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_000777_060 Hb_000777_060 Hb_000061_160--Hb_000777_060 Hb_000061_160--Hb_001621_180 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260 Hb_000330_170 Hb_000330_170 Hb_000061_160--Hb_000330_170 Hb_007441_180--Hb_001621_180 Hb_007441_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_002234_210 Hb_002234_210 Hb_007441_180--Hb_002234_210 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001454_330--Hb_000089_130 Hb_000417_110 Hb_000417_110 Hb_001454_330--Hb_000417_110 Hb_001454_330--Hb_011139_020 Hb_001454_330--Hb_001951_110 Hb_001454_330--Hb_001804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9202 1.00969 2.24549 3.83668 22.5793 23.5649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1584 43.8038 15.949 5.63401 1.1454

CAGE analysis