Hb_001104_160

Information

Type -
Description -
Location Contig1104: 185927-198994
Sequence    

Annotation

kegg
ID rcu:RCOM_0382890
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012072957.1
description PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067KMG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06746 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ctr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03254: 185879-187706 , PASA_asmbl_03255: 186337-198872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_160 0.0 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
2 Hb_004195_200 0.0533420502 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
3 Hb_000289_040 0.0592830121 - - Poly(A) polymerase alpha, putative [Ricinus communis]
4 Hb_002835_230 0.0630871537 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_014361_070 0.063258359 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
6 Hb_000402_080 0.0685635652 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
7 Hb_000696_230 0.0688263537 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_008103_060 0.0721405599 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
9 Hb_002876_130 0.0722141384 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
10 Hb_000190_120 0.0728748089 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
11 Hb_007576_110 0.0777790625 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
12 Hb_002823_030 0.0778351718 - - -
13 Hb_009545_100 0.0782562702 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
14 Hb_000029_300 0.0785047429 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
15 Hb_000975_040 0.0786022549 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
16 Hb_000366_120 0.0787185883 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
17 Hb_001195_320 0.0788988981 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
18 Hb_000395_130 0.0792540262 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
19 Hb_000614_210 0.0793521309 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
20 Hb_002248_080 0.080419209 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_160 Hb_001104_160 Hb_004195_200 Hb_004195_200 Hb_001104_160--Hb_004195_200 Hb_000289_040 Hb_000289_040 Hb_001104_160--Hb_000289_040 Hb_002835_230 Hb_002835_230 Hb_001104_160--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_001104_160--Hb_014361_070 Hb_000402_080 Hb_000402_080 Hb_001104_160--Hb_000402_080 Hb_000696_230 Hb_000696_230 Hb_001104_160--Hb_000696_230 Hb_002375_010 Hb_002375_010 Hb_004195_200--Hb_002375_010 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_020831_030 Hb_020831_030 Hb_004195_200--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_004195_200--Hb_003640_040 Hb_002876_130 Hb_002876_130 Hb_000289_040--Hb_002876_130 Hb_140049_040 Hb_140049_040 Hb_000289_040--Hb_140049_040 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_002835_230--Hb_014361_070 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_003371_110 Hb_003371_110 Hb_014361_070--Hb_003371_110 Hb_014361_070--Hb_007576_110 Hb_014361_070--Hb_002823_030 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_000928_220 Hb_000928_220 Hb_000402_080--Hb_000928_220 Hb_000076_160 Hb_000076_160 Hb_000402_080--Hb_000076_160 Hb_008453_140 Hb_008453_140 Hb_000402_080--Hb_008453_140 Hb_000402_080--Hb_002876_130 Hb_000402_080--Hb_000696_230 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57529 14.2594 7.9158 10.253 16.9022 12.2625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.35575 12.0551 8.26882 9.82854 8.62795

CAGE analysis