Hb_001104_170

Information

Type transcription factor
Description TF Family: HSF
Location Contig1104: 209864-212605
Sequence    

Annotation

kegg
ID rcu:RCOM_0383000
description DNA binding protein, putative
nr
ID XP_012072956.1
description PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
swissprot
ID Q8GYY1
description Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2
trembl
ID A0A067KYG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06744 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03258: 209734-212597 , PASA_asmbl_03259: 209734-212597
cDNA
(Sanger)
(ID:Location)		 001_C14.ab1: 209734-210521

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_170 0.0 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
2 Hb_000442_010 0.0629663232 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
3 Hb_005389_160 0.0713206607 - - PREDICTED: casein kinase I [Jatropha curcas]
4 Hb_001766_020 0.0756700837 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
5 Hb_000291_010 0.077561926 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
6 Hb_000363_400 0.0868016355 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
7 Hb_001410_020 0.0878521928 - - cdk8, putative [Ricinus communis]
8 Hb_010417_070 0.0887655821 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
9 Hb_002263_040 0.0888602121 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_010381_030 0.0899255297 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
11 Hb_022256_020 0.0939159292 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
12 Hb_002217_170 0.0960337526 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
13 Hb_005551_020 0.0967531006 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
14 Hb_012239_020 0.0972358781 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_000373_230 0.0972376764 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_004916_010 0.0977202155 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
17 Hb_003728_040 0.0996597966 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
18 Hb_052764_030 0.0996614798 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
19 Hb_000347_120 0.0999153964 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
20 Hb_000363_120 0.1003954502 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_170 Hb_001104_170 Hb_000442_010 Hb_000442_010 Hb_001104_170--Hb_000442_010 Hb_005389_160 Hb_005389_160 Hb_001104_170--Hb_005389_160 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_002798_070 Hb_002798_070 Hb_000442_010--Hb_002798_070 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_010417_070 Hb_010417_070 Hb_005389_160--Hb_010417_070 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_001766_020--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_001766_020--Hb_003728_040 Hb_004440_040 Hb_004440_040 Hb_001766_020--Hb_004440_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_001766_020--Hb_005389_160 Hb_012239_020 Hb_012239_020 Hb_000291_010--Hb_012239_020 Hb_005018_020 Hb_005018_020 Hb_000291_010--Hb_005018_020 Hb_060094_020 Hb_060094_020 Hb_000291_010--Hb_060094_020 Hb_001279_170 Hb_001279_170 Hb_000291_010--Hb_001279_170 Hb_000086_420 Hb_000086_420 Hb_000291_010--Hb_000086_420 Hb_000352_260 Hb_000352_260 Hb_000363_400--Hb_000352_260 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_005288_010 Hb_005288_010 Hb_000363_400--Hb_005288_010 Hb_000363_400--Hb_005389_160 Hb_008160_030 Hb_008160_030 Hb_000363_400--Hb_008160_030 Hb_010381_030 Hb_010381_030 Hb_000363_400--Hb_010381_030 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4796 33.0243 18.0238 10.4774 9.85487 11.0553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.033 12.3777 17.9084 15.5413 9.21737

CAGE analysis