Hb_001104_190

Information

Type -
Description -
Location Contig1104: 230238-237775
Sequence    

Annotation

kegg
ID rcu:RCOM_0383030
description hypothetical protein
nr
ID XP_012066438.1
description PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
swissprot
ID Q0WPF2
description Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana GN=PCFS4 PE=1 SV=1
trembl
ID A0A067L2I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23616 PE=4 SV=1
Gene Ontology
ID GO:0046872
description enth vhs family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03262: 230253-237729 , PASA_asmbl_03263: 230253-231464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_190 0.0 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
2 Hb_006117_080 0.0546116039 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
3 Hb_000069_470 0.0557552351 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_003470_080 0.0655160774 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
5 Hb_000321_150 0.0691616544 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
6 Hb_001080_230 0.0706179304 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
7 Hb_000599_190 0.0721735457 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
8 Hb_000003_190 0.0736872983 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
9 Hb_002798_070 0.0762079468 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_009150_020 0.0773622558 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
11 Hb_001828_130 0.0788814574 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
12 Hb_000003_550 0.0799246756 - - -
13 Hb_009767_080 0.0820553496 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
14 Hb_001614_060 0.0834902605 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
15 Hb_002253_080 0.0844733494 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
16 Hb_005725_210 0.0848215665 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
17 Hb_008959_020 0.0855421333 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
18 Hb_002872_040 0.085675563 - - pumilio, putative [Ricinus communis]
19 Hb_002960_080 0.0859810323 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
20 Hb_004483_040 0.0865253436 - - hypothetical protein JCGZ_22047 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_190 Hb_001104_190 Hb_006117_080 Hb_006117_080 Hb_001104_190--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_001104_190--Hb_000069_470 Hb_003470_080 Hb_003470_080 Hb_001104_190--Hb_003470_080 Hb_000321_150 Hb_000321_150 Hb_001104_190--Hb_000321_150 Hb_001080_230 Hb_001080_230 Hb_001104_190--Hb_001080_230 Hb_000599_190 Hb_000599_190 Hb_001104_190--Hb_000599_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_000003_190 Hb_000003_190 Hb_003470_080--Hb_000003_190 Hb_003206_130 Hb_003206_130 Hb_003470_080--Hb_003206_130 Hb_002253_080 Hb_002253_080 Hb_003470_080--Hb_002253_080 Hb_003470_080--Hb_001080_230 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_002007_160 Hb_002007_160 Hb_000599_190--Hb_002007_160 Hb_145022_010 Hb_145022_010 Hb_000599_190--Hb_145022_010 Hb_004705_020 Hb_004705_020 Hb_000599_190--Hb_004705_020 Hb_001217_050 Hb_001217_050 Hb_000599_190--Hb_001217_050 Hb_000599_190--Hb_009767_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8017 32.6475 7.82788 10.9032 14.6542 15.9173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6212 13.1707 12.8654 14.1651 17.2269

CAGE analysis