Hb_001104_200

Information

Type -
Description -
Location Contig1104: 238670-239464
Sequence    

Annotation

kegg
ID tcc:TCM_022449
description Phytosulfokine 3 precursor, putative
nr
ID XP_007027623.1
description Phytosulfokine 3 precursor, putative [Theobroma cacao]
swissprot
ID Q8LA14
description Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2 SV=2
trembl
ID A0A061ESV9
description Phytosulfokine 3, putative OS=Theobroma cacao GN=TCM_022449 PE=4 SV=1
Gene Ontology
ID GO:0005576
description phytosulfokines 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_200 0.0 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
2 Hb_000204_030 0.0766790945 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_029510_110 0.0985956472 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
4 Hb_000230_230 0.124231091 - - hydrolase, putative [Ricinus communis]
5 Hb_000934_170 0.1326208159 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000563_610 0.1375361021 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
7 Hb_000580_070 0.1399393351 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_004445_090 0.1464726482 - - conserved hypothetical protein [Ricinus communis]
9 Hb_061195_010 0.1486435038 - - Galactose oxidase precursor, putative [Ricinus communis]
10 Hb_000648_120 0.1489326055 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
11 Hb_173448_010 0.1499440751 - - PREDICTED: galactose oxidase-like [Jatropha curcas]
12 Hb_001268_330 0.1518829396 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_001366_250 0.152056533 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
14 Hb_000438_190 0.152456897 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
15 Hb_003428_100 0.1528339711 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_008768_010 0.1538868901 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
17 Hb_012796_050 0.155720298 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
18 Hb_002046_100 0.1597128264 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
19 Hb_000135_050 0.1622036764 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
20 Hb_002749_070 0.1630376415 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_200 Hb_001104_200 Hb_000204_030 Hb_000204_030 Hb_001104_200--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_001104_200--Hb_029510_110 Hb_000230_230 Hb_000230_230 Hb_001104_200--Hb_000230_230 Hb_000934_170 Hb_000934_170 Hb_001104_200--Hb_000934_170 Hb_000563_610 Hb_000563_610 Hb_001104_200--Hb_000563_610 Hb_000580_070 Hb_000580_070 Hb_001104_200--Hb_000580_070 Hb_000204_030--Hb_029510_110 Hb_002046_100 Hb_002046_100 Hb_000204_030--Hb_002046_100 Hb_000204_030--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_000204_030--Hb_004445_090 Hb_003428_100 Hb_003428_100 Hb_000204_030--Hb_003428_100 Hb_061195_010 Hb_061195_010 Hb_029510_110--Hb_061195_010 Hb_029510_110--Hb_000563_610 Hb_001366_250 Hb_001366_250 Hb_029510_110--Hb_001366_250 Hb_012239_080 Hb_012239_080 Hb_029510_110--Hb_012239_080 Hb_025526_010 Hb_025526_010 Hb_000230_230--Hb_025526_010 Hb_006788_150 Hb_006788_150 Hb_000230_230--Hb_006788_150 Hb_031042_030 Hb_031042_030 Hb_000230_230--Hb_031042_030 Hb_008768_010 Hb_008768_010 Hb_000230_230--Hb_008768_010 Hb_000230_230--Hb_000580_070 Hb_002749_070 Hb_002749_070 Hb_000934_170--Hb_002749_070 Hb_004544_070 Hb_004544_070 Hb_000934_170--Hb_004544_070 Hb_001758_120 Hb_001758_120 Hb_000934_170--Hb_001758_120 Hb_000347_530 Hb_000347_530 Hb_000934_170--Hb_000347_530 Hb_006637_040 Hb_006637_040 Hb_000934_170--Hb_006637_040 Hb_164283_010 Hb_164283_010 Hb_000934_170--Hb_164283_010 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_000032_560 Hb_000032_560 Hb_000580_070--Hb_000032_560 Hb_018133_110 Hb_018133_110 Hb_000580_070--Hb_018133_110 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19919 11.1264 8.43715 19.5889 0.644352 3.08974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06561 2.27267 0.708188 163.285 12.0652

CAGE analysis