Hb_001104_250

Information

Type transcription factor
Description TF Family: ERF
Location Contig1104: 318337-318942
Sequence    

Annotation

kegg
ID rcu:RCOM_0384200
description Dehydration-responsive element-binding protein 1B, putative
nr
ID XP_002528595.1
description Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
swissprot
ID Q9SJR0
description Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1
trembl
ID B9SRH6
description Dehydration-responsive element-binding protein 1B, putative OS=Ricinus communis GN=RCOM_0384200 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf024-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_250 0.0 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
2 Hb_002548_010 0.0564393174 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
3 Hb_000769_050 0.0583389519 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
4 Hb_003839_060 0.0688098986 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
5 Hb_003442_020 0.0697428294 - - ccd1, putative [Ricinus communis]
6 Hb_123887_010 0.0751359325 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
7 Hb_000152_090 0.079075818 - - unnamed protein product [Coffea canephora]
8 Hb_000167_090 0.0974910987 - - conserved hypothetical protein [Ricinus communis]
9 Hb_174644_010 0.1006337666 - - -
10 Hb_001948_100 0.104174615 - - conserved hypothetical protein [Ricinus communis]
11 Hb_023536_020 0.1042005991 - - Nicotianamine synthase, putative [Ricinus communis]
12 Hb_003337_010 0.1106885652 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010261_050 0.1160462557 - - DNA binding protein, putative [Ricinus communis]
14 Hb_001766_140 0.1246845602 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
15 Hb_103000_010 0.1275267052 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
16 Hb_027402_110 0.129717437 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
17 Hb_004652_040 0.1317000628 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_000433_060 0.1322405479 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
19 Hb_005695_050 0.1339274779 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
20 Hb_002374_070 0.1341297885 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001104_250 Hb_001104_250 Hb_002548_010 Hb_002548_010 Hb_001104_250--Hb_002548_010 Hb_000769_050 Hb_000769_050 Hb_001104_250--Hb_000769_050 Hb_003839_060 Hb_003839_060 Hb_001104_250--Hb_003839_060 Hb_003442_020 Hb_003442_020 Hb_001104_250--Hb_003442_020 Hb_123887_010 Hb_123887_010 Hb_001104_250--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_001104_250--Hb_000152_090 Hb_000167_090 Hb_000167_090 Hb_002548_010--Hb_000167_090 Hb_002548_010--Hb_000769_050 Hb_000203_090 Hb_000203_090 Hb_002548_010--Hb_000203_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010 Hb_000769_050--Hb_123887_010 Hb_000769_050--Hb_000152_090 Hb_000769_050--Hb_000167_090 Hb_000769_050--Hb_003442_020 Hb_174644_010 Hb_174644_010 Hb_003839_060--Hb_174644_010 Hb_003839_060--Hb_003442_020 Hb_003839_060--Hb_123887_010 Hb_023536_020 Hb_023536_020 Hb_003839_060--Hb_023536_020 Hb_003777_100 Hb_003777_100 Hb_003839_060--Hb_003777_100 Hb_010261_050 Hb_010261_050 Hb_003442_020--Hb_010261_050 Hb_003337_010 Hb_003337_010 Hb_003442_020--Hb_003337_010 Hb_003442_020--Hb_123887_010 Hb_003442_020--Hb_003777_100 Hb_123887_010--Hb_010261_050 Hb_123887_010--Hb_174644_010 Hb_001948_100 Hb_001948_100 Hb_000152_090--Hb_001948_100 Hb_009838_030 Hb_009838_030 Hb_000152_090--Hb_009838_030 Hb_003073_060 Hb_003073_060 Hb_000152_090--Hb_003073_060 Hb_000152_090--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_000152_090--Hb_002014_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.160362 0.0346943 0.361403 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis