Hb_001104_270

Information

Type -
Description -
Location Contig1104: 340968-341390
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13980g
description POPTRDRAFT_764843; hypothetical protein
nr
ID XP_002310300.1
description hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HFK3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03268: 341240-341395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_270 0.0 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
2 Hb_013720_010 0.087202572 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
3 Hb_004112_050 0.0968828589 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000060_100 0.1032112091 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
5 Hb_002218_080 0.1095872891 - - Ankyrin repeat family protein, putative [Theobroma cacao]
6 Hb_004899_360 0.1119285631 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_035677_010 0.112762456 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006698_020 0.1135138211 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
9 Hb_001310_080 0.1143588439 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
10 Hb_000247_150 0.1166433007 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
11 Hb_004945_050 0.1203078621 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
12 Hb_000656_350 0.122514793 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
13 Hb_113396_010 0.1228135058 - - cytochrome P450, putative [Ricinus communis]
14 Hb_006573_280 0.1229392092 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
15 Hb_160576_010 0.1246465137 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
16 Hb_096930_010 0.1249209452 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
17 Hb_000649_160 0.1250881823 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
18 Hb_002234_200 0.1257437038 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
19 Hb_000000_070 0.1262512381 - - allene oxide synthase [Hevea brasiliensis]
20 Hb_008948_110 0.1266787222 - - PREDICTED: peroxidase 25 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_270 Hb_001104_270 Hb_013720_010 Hb_013720_010 Hb_001104_270--Hb_013720_010 Hb_004112_050 Hb_004112_050 Hb_001104_270--Hb_004112_050 Hb_000060_100 Hb_000060_100 Hb_001104_270--Hb_000060_100 Hb_002218_080 Hb_002218_080 Hb_001104_270--Hb_002218_080 Hb_004899_360 Hb_004899_360 Hb_001104_270--Hb_004899_360 Hb_035677_010 Hb_035677_010 Hb_001104_270--Hb_035677_010 Hb_000331_710 Hb_000331_710 Hb_013720_010--Hb_000331_710 Hb_006698_020 Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_000247_150 Hb_000247_150 Hb_013720_010--Hb_000247_150 Hb_000027_060 Hb_000027_060 Hb_013720_010--Hb_000027_060 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_001310_080 Hb_001310_080 Hb_004112_050--Hb_001310_080 Hb_004724_300 Hb_004724_300 Hb_004112_050--Hb_004724_300 Hb_004112_050--Hb_002218_080 Hb_007102_010 Hb_007102_010 Hb_004112_050--Hb_007102_010 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030 Hb_113396_010 Hb_113396_010 Hb_004112_050--Hb_113396_010 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_004945_050 Hb_004945_050 Hb_000060_100--Hb_004945_050 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160 Hb_002218_080--Hb_002110_050 Hb_002218_080--Hb_001310_080 Hb_002218_080--Hb_113396_010 Hb_002548_020 Hb_002548_020 Hb_002218_080--Hb_002548_020 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_008202_020 Hb_008202_020 Hb_004899_360--Hb_008202_020 Hb_004109_240 Hb_004109_240 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_097007_020 Hb_097007_020 Hb_004899_360--Hb_097007_020 Hb_001619_140 Hb_001619_140 Hb_004899_360--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_004899_360--Hb_002010_020 Hb_035677_010--Hb_000247_150 Hb_012496_010 Hb_012496_010 Hb_035677_010--Hb_012496_010 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_035677_010--Hb_013720_010 Hb_035677_010--Hb_004899_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.82547 0.61482 0.613271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119577 0.252161

CAGE analysis