Hb_001104_280

Information

Type -
Description -
Location Contig1104: 349977-351317
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13970g
description POPTRDRAFT_802986; hypothetical protein
nr
ID XP_012066444.1
description PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9HFK2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13970g PE=4 SV=2
Gene Ontology
ID GO:0009741
description upf0481 protein at3g47200-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03270: 351051-351287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_280 0.0 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
2 Hb_000000_060 0.0653325371 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
3 Hb_005489_160 0.0818017872 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
4 Hb_005797_030 0.0829940402 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
5 Hb_019229_020 0.0837849879 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_012395_070 0.1006297318 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
7 Hb_002007_140 0.1061789823 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
8 Hb_000265_010 0.1121308761 - - amino acid transporter, putative [Ricinus communis]
9 Hb_002007_230 0.1163808377 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
10 Hb_000920_360 0.1218893685 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
11 Hb_088916_010 0.1262791788 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
12 Hb_001838_010 0.1281959586 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
13 Hb_000589_180 0.1286211033 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
14 Hb_003086_200 0.130480161 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_151364_010 0.1328245779 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_002003_020 0.1343453977 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
17 Hb_001135_290 0.134399722 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
18 Hb_001638_110 0.1362405724 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001864_010 0.1397188792 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000141_220 0.1409860513 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001104_280 Hb_001104_280 Hb_000000_060 Hb_000000_060 Hb_001104_280--Hb_000000_060 Hb_005489_160 Hb_005489_160 Hb_001104_280--Hb_005489_160 Hb_005797_030 Hb_005797_030 Hb_001104_280--Hb_005797_030 Hb_019229_020 Hb_019229_020 Hb_001104_280--Hb_019229_020 Hb_012395_070 Hb_012395_070 Hb_001104_280--Hb_012395_070 Hb_002007_140 Hb_002007_140 Hb_001104_280--Hb_002007_140 Hb_000000_060--Hb_019229_020 Hb_001638_110 Hb_001638_110 Hb_000000_060--Hb_001638_110 Hb_000000_060--Hb_002007_140 Hb_094637_010 Hb_094637_010 Hb_000000_060--Hb_094637_010 Hb_000045_180 Hb_000045_180 Hb_000000_060--Hb_000045_180 Hb_005489_160--Hb_005797_030 Hb_151364_010 Hb_151364_010 Hb_005489_160--Hb_151364_010 Hb_000221_170 Hb_000221_170 Hb_005489_160--Hb_000221_170 Hb_001864_010 Hb_001864_010 Hb_005489_160--Hb_001864_010 Hb_002475_100 Hb_002475_100 Hb_005489_160--Hb_002475_100 Hb_005797_030--Hb_001864_010 Hb_002007_230 Hb_002007_230 Hb_005797_030--Hb_002007_230 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_003086_200 Hb_003086_200 Hb_005797_030--Hb_003086_200 Hb_000286_190 Hb_000286_190 Hb_005797_030--Hb_000286_190 Hb_019229_020--Hb_001638_110 Hb_000616_050 Hb_000616_050 Hb_019229_020--Hb_000616_050 Hb_000649_030 Hb_000649_030 Hb_019229_020--Hb_000649_030 Hb_000237_150 Hb_000237_150 Hb_019229_020--Hb_000237_150 Hb_002805_150 Hb_002805_150 Hb_012395_070--Hb_002805_150 Hb_012753_200 Hb_012753_200 Hb_012395_070--Hb_012753_200 Hb_012395_070--Hb_005797_030 Hb_000265_010 Hb_000265_010 Hb_012395_070--Hb_000265_010 Hb_004574_010 Hb_004574_010 Hb_012395_070--Hb_004574_010 Hb_009581_050 Hb_009581_050 Hb_002007_140--Hb_009581_050 Hb_003807_020 Hb_003807_020 Hb_002007_140--Hb_003807_020 Hb_002007_140--Hb_012753_200 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_000335_050 Hb_000335_050 Hb_002007_140--Hb_000335_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.30144 0.118156 1.11 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.45963 0.524207

CAGE analysis