Hb_001105_010

Information

Type desease resistance
Description Gene Name: AIG1
Location Contig1105: 5759-7214
Sequence    

Annotation

kegg
ID rcu:RCOM_1341630
description aig1, putative
nr
ID XP_012065294.1
description PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
swissprot
ID O23680
description Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1
trembl
ID A0A067L9C1
description Translocase of chloroplast OS=Jatropha curcas GN=JCGZ_23021 PE=3 SV=1
Gene Ontology
ID GO:0005525
description translocase of chloroplast chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03276: 6055-7131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_010 0.0 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
2 Hb_007632_110 0.0660412314 - - chromatin regulatory protein sir2, putative [Ricinus communis]
3 Hb_135377_010 0.078952815 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
4 Hb_003467_010 0.0792106497 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
5 Hb_006355_010 0.086531902 - - PREDICTED: protein NLRC3 [Jatropha curcas]
6 Hb_009222_010 0.08725857 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000392_050 0.0909211013 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
8 Hb_000785_030 0.0910057452 - - hypothetical protein RCOM_0808030 [Ricinus communis]
9 Hb_001405_120 0.0930247047 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
10 Hb_005565_040 0.0931224635 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007026_030 0.0946757696 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
12 Hb_011942_080 0.094692359 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
13 Hb_001142_050 0.0950640331 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
14 Hb_000270_460 0.0965686842 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
15 Hb_004450_060 0.0967480319 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
16 Hb_000179_030 0.0978042244 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
17 Hb_002942_050 0.0991326671 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
18 Hb_001766_150 0.1008015942 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
19 Hb_001102_080 0.1013869169 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
20 Hb_003044_100 0.1018124185 - - hypothetical protein F383_08446 [Gossypium arboreum]

Gene co-expression network

sample Hb_001105_010 Hb_001105_010 Hb_007632_110 Hb_007632_110 Hb_001105_010--Hb_007632_110 Hb_135377_010 Hb_135377_010 Hb_001105_010--Hb_135377_010 Hb_003467_010 Hb_003467_010 Hb_001105_010--Hb_003467_010 Hb_006355_010 Hb_006355_010 Hb_001105_010--Hb_006355_010 Hb_009222_010 Hb_009222_010 Hb_001105_010--Hb_009222_010 Hb_000392_050 Hb_000392_050 Hb_001105_010--Hb_000392_050 Hb_007632_110--Hb_003467_010 Hb_011942_080 Hb_011942_080 Hb_007632_110--Hb_011942_080 Hb_007632_110--Hb_006355_010 Hb_004450_060 Hb_004450_060 Hb_007632_110--Hb_004450_060 Hb_000207_130 Hb_000207_130 Hb_007632_110--Hb_000207_130 Hb_007026_030 Hb_007026_030 Hb_135377_010--Hb_007026_030 Hb_001983_030 Hb_001983_030 Hb_135377_010--Hb_001983_030 Hb_178968_100 Hb_178968_100 Hb_135377_010--Hb_178968_100 Hb_000797_050 Hb_000797_050 Hb_135377_010--Hb_000797_050 Hb_001102_080 Hb_001102_080 Hb_135377_010--Hb_001102_080 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_003467_010--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_000179_030 Hb_000179_030 Hb_006355_010--Hb_000179_030 Hb_002175_030 Hb_002175_030 Hb_006355_010--Hb_002175_030 Hb_000334_270 Hb_000334_270 Hb_006355_010--Hb_000334_270 Hb_001486_340 Hb_001486_340 Hb_006355_010--Hb_001486_340 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_009222_010--Hb_011942_080 Hb_009222_010--Hb_003467_010 Hb_000392_050--Hb_000785_030 Hb_000392_050--Hb_009222_010 Hb_018790_070 Hb_018790_070 Hb_000392_050--Hb_018790_070 Hb_000392_050--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_000392_050--Hb_002942_050 Hb_001142_050 Hb_001142_050 Hb_000392_050--Hb_001142_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.233 41.8041 66.0312 35.1312 63.6583 112.501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.2966 51.838 25.6526 46.5052 23.1488

CAGE analysis