Hb_001105_030

Information

Type -
Description -
Location Contig1105: 14382-20699
Sequence    

Annotation

kegg
ID rcu:RCOM_1341660
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_012083057.1
description PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
swissprot
ID Q9XGP7
description Tricin synthase 1 OS=Oryza sativa subsp. japonica GN=ROMT-15 PE=1 SV=1
trembl
ID A0A067K010
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14149 PE=4 SV=1
Gene Ontology
ID GO:0008171
description s-adenosyl-l-methionine-dependent methyltransferase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03284: 14512-20630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_030 0.0 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
2 Hb_000059_370 0.0446088259 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
3 Hb_001821_010 0.0506633494 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
4 Hb_012725_050 0.0537220782 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
5 Hb_001157_020 0.05973642 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
6 Hb_000580_090 0.0636697788 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
7 Hb_000815_320 0.0675669444 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
8 Hb_004735_040 0.0691363348 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
9 Hb_002686_020 0.0693040937 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
10 Hb_007416_030 0.071163478 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
11 Hb_004116_190 0.0714758672 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
12 Hb_000656_240 0.0717937292 - - proteasome subunit alpha type, putative [Ricinus communis]
13 Hb_118419_010 0.0725925539 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_008648_010 0.0748921425 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
15 Hb_002609_020 0.0762390315 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
16 Hb_001195_280 0.0763658875 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
17 Hb_002477_070 0.0764171135 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_001633_050 0.076899857 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
19 Hb_000331_080 0.0774824755 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
20 Hb_000676_180 0.0779003254 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]

Gene co-expression network

sample Hb_001105_030 Hb_001105_030 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001821_010 Hb_001821_010 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_000059_370--Hb_001821_010 Hb_001821_010--Hb_000815_320 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_012725_050--Hb_001157_020 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_001157_020--Hb_028227_020 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_001157_020--Hb_000815_320 Hb_004109_170 Hb_004109_170 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000656_240 Hb_000656_240 Hb_000580_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000580_090--Hb_004116_190 Hb_000580_090--Hb_000815_320 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.75757 3.53818 7.38247 5.87061 9.52911 8.32758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4634 17.1086 10.8758 5.43637 6.70109

CAGE analysis