Hb_001105_050

Information

Type -
Description -
Location Contig1105: 24637-35335
Sequence    

Annotation

kegg
ID rcu:RCOM_1341680
description hypothetical protein
nr
ID XP_012083062.1
description PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14147 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03289: 30114-35504 , PASA_asmbl_03290: 31230-35114 , PASA_asmbl_03291: 31191-31494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_050 0.0 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
2 Hb_065525_130 0.1006452444 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000085_140 0.1149852503 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
4 Hb_005288_080 0.119771225 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000436_100 0.1205806482 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
6 Hb_000042_340 0.1235026859 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
7 Hb_003638_010 0.1250858166 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
8 Hb_003992_030 0.1253180483 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
9 Hb_009270_040 0.1254921696 - - -
10 Hb_006570_010 0.1257265941 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000156_160 0.126131906 - - PREDICTED: urease accessory protein G [Jatropha curcas]
12 Hb_000175_590 0.126203635 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_000525_100 0.131212297 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
14 Hb_004079_120 0.1338468134 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
15 Hb_002265_010 0.1343971526 - - ef-hand calcium binding protein, putative [Ricinus communis]
16 Hb_000809_210 0.1346568884 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
17 Hb_001839_020 0.136585766 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_002092_100 0.1369140169 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
19 Hb_000538_260 0.1383832024 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
20 Hb_016734_090 0.1384953439 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001105_050 Hb_001105_050 Hb_065525_130 Hb_065525_130 Hb_001105_050--Hb_065525_130 Hb_000085_140 Hb_000085_140 Hb_001105_050--Hb_000085_140 Hb_005288_080 Hb_005288_080 Hb_001105_050--Hb_005288_080 Hb_000436_100 Hb_000436_100 Hb_001105_050--Hb_000436_100 Hb_000042_340 Hb_000042_340 Hb_001105_050--Hb_000042_340 Hb_003638_010 Hb_003638_010 Hb_001105_050--Hb_003638_010 Hb_065525_130--Hb_000085_140 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_032202_080 Hb_032202_080 Hb_000085_140--Hb_032202_080 Hb_001377_110 Hb_001377_110 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_098209_010 Hb_098209_010 Hb_000085_140--Hb_098209_010 Hb_000922_020 Hb_000922_020 Hb_005288_080--Hb_000922_020 Hb_000525_100 Hb_000525_100 Hb_005288_080--Hb_000525_100 Hb_000679_340 Hb_000679_340 Hb_005288_080--Hb_000679_340 Hb_000264_070 Hb_000264_070 Hb_005288_080--Hb_000264_070 Hb_001077_030 Hb_001077_030 Hb_005288_080--Hb_001077_030 Hb_000156_160 Hb_000156_160 Hb_005288_080--Hb_000156_160 Hb_000424_020 Hb_000424_020 Hb_000436_100--Hb_000424_020 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_029142_030 Hb_029142_030 Hb_000436_100--Hb_029142_030 Hb_001930_030 Hb_001930_030 Hb_000436_100--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000436_100--Hb_000003_300 Hb_002255_040 Hb_002255_040 Hb_000436_100--Hb_002255_040 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_009449_090 Hb_009449_090 Hb_003638_010--Hb_009449_090 Hb_000024_120 Hb_000024_120 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3515 20.6521 37.0224 11.8253 27.5015 25.3703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6258 6.9056 4.75007 3.74649 20.4578

CAGE analysis