Hb_001105_070

Information

Type -
Description -
Location Contig1105: 36343-38082
Sequence    

Annotation

kegg
ID rcu:RCOM_1341690
description hypothetical protein
nr
ID XP_012070672.1
description PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
swissprot
ID Q6P4L9
description Nuclear factor related to kappa-B-binding protein OS=Xenopus tropicalis GN=nfrkb PE=2 SV=1
trembl
ID A0A067KVD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00715 PE=4 SV=1
Gene Ontology
ID GO:0031011
description nuclear factor related to kappa-b-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03293: 38037-39222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_070 0.0 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
2 Hb_005431_010 0.0582135749 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
3 Hb_000025_120 0.0676099083 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
4 Hb_012053_070 0.0691955233 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
5 Hb_000987_070 0.0692829554 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
6 Hb_009773_020 0.0705316628 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
7 Hb_065525_020 0.0733310434 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
8 Hb_158467_010 0.0755405279 - - transporter, putative [Ricinus communis]
9 Hb_000705_210 0.0767743327 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
10 Hb_002030_040 0.0806206873 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
11 Hb_005433_040 0.0829389856 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
12 Hb_000201_120 0.0840336515 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
13 Hb_033594_150 0.0857774685 - - unknown [Lotus japonicus]
14 Hb_002016_100 0.0859826467 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
15 Hb_000174_070 0.0884607202 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
16 Hb_010042_010 0.0886197166 - - Urease accessory protein ureD, putative [Ricinus communis]
17 Hb_005289_030 0.0896385724 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
18 Hb_000240_090 0.0897162134 - - Rab5 [Hevea brasiliensis]
19 Hb_000111_330 0.0900404307 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
20 Hb_000496_060 0.0902581549 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]

Gene co-expression network

sample Hb_001105_070 Hb_001105_070 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_000009_160 Hb_000009_160 Hb_005431_010--Hb_000009_160 Hb_029866_040 Hb_029866_040 Hb_005431_010--Hb_029866_040 Hb_000705_210 Hb_000705_210 Hb_005431_010--Hb_000705_210 Hb_000905_200 Hb_000905_200 Hb_005431_010--Hb_000905_200 Hb_005431_010--Hb_009773_020 Hb_000496_060 Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_000987_070--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_000987_070--Hb_002030_040 Hb_000987_070--Hb_000705_210 Hb_000201_120 Hb_000201_120 Hb_000987_070--Hb_000201_120 Hb_030736_080 Hb_030736_080 Hb_000987_070--Hb_030736_080 Hb_009773_020--Hb_002030_040 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140 Hb_065525_020--Hb_002030_040 Hb_065525_020--Hb_158467_010 Hb_010042_010 Hb_010042_010 Hb_065525_020--Hb_010042_010 Hb_000934_250 Hb_000934_250 Hb_065525_020--Hb_000934_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08552 1.70883 1.40984 3.61859 2.84206 3.27186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0939 6.07933 6.30885 2.0832 1.6152

CAGE analysis