Hb_001105_080

Information

Type -
Description -
Location Contig1105: 38268-38929
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03293: 38037-39222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_080 0.0 - - -
2 Hb_005396_140 0.0057817821 - - -
3 Hb_140618_010 0.0082820306 - - -
4 Hb_001241_090 0.0083143185 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
5 Hb_052600_010 0.0084345967 - - -
6 Hb_005834_030 0.0482003544 - - -
7 Hb_003675_010 0.0627129577 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
8 Hb_000270_820 0.0799034235 - - -
9 Hb_000956_140 0.0821254552 - - -
10 Hb_001534_020 0.104692867 - - conserved hypothetical protein [Ricinus communis]
11 Hb_137268_010 0.1152311279 - - -
12 Hb_000510_380 0.1315244066 - - -
13 Hb_000482_130 0.1315292667 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_012543_020 0.1315335982 - - -
15 Hb_185616_010 0.131540546 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_061463_010 0.1315775978 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_002130_010 0.1315903988 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_000098_160 0.1316544474 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003052_160 0.1316544474 - - -
20 Hb_000413_310 0.1316670798 - - -

Gene co-expression network

sample Hb_001105_080 Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_001105_080--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_001105_080--Hb_140618_010 Hb_001241_090 Hb_001241_090 Hb_001105_080--Hb_001241_090 Hb_052600_010 Hb_052600_010 Hb_001105_080--Hb_052600_010 Hb_005834_030 Hb_005834_030 Hb_001105_080--Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_001105_080--Hb_003675_010 Hb_005396_140--Hb_140618_010 Hb_005396_140--Hb_001241_090 Hb_005396_140--Hb_052600_010 Hb_005396_140--Hb_005834_030 Hb_005396_140--Hb_003675_010 Hb_140618_010--Hb_001241_090 Hb_140618_010--Hb_052600_010 Hb_140618_010--Hb_005834_030 Hb_140618_010--Hb_003675_010 Hb_001241_090--Hb_052600_010 Hb_001241_090--Hb_005834_030 Hb_001241_090--Hb_003675_010 Hb_052600_010--Hb_005834_030 Hb_052600_010--Hb_003675_010 Hb_005834_030--Hb_003675_010 Hb_000270_820 Hb_000270_820 Hb_005834_030--Hb_000270_820 Hb_003675_010--Hb_000270_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72064 1.93901 0 0 0

CAGE analysis