Hb_001105_120

Information

Type -
Description -
Location Contig1105: 73251-77847
Sequence    

Annotation

kegg
ID rcu:RCOM_1342030
description glucose-1-phosphate adenylyltransferase, putative (EC:2.7.7.27)
nr
ID XP_002515141.1
description glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
swissprot
ID P55230
description Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2
trembl
ID B9RN02
description Glucose-1-phosphate adenylyltransferase OS=Ricinus communis GN=RCOM_1342030 PE=3 SV=1
Gene Ontology
ID GO:0008878
description glucose-1-phosphate adenylyltransferase large subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03299: 74200-75041 , PASA_asmbl_03300: 75785-77946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_120 0.0 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
2 Hb_132840_150 0.1274353733 - - RNA-binding region-containing protein, putative [Ricinus communis]
3 Hb_017908_010 0.1349717013 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000417_090 0.1497171234 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000190_170 0.154249754 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
6 Hb_004117_090 0.1549759941 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
7 Hb_010381_100 0.1562986903 - - Phospholipase D epsilon [Morus notabilis]
8 Hb_015934_050 0.1604389409 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
9 Hb_000107_280 0.1620528378 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000363_390 0.1644688108 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
11 Hb_010889_010 0.1649982624 - - PREDICTED: myosin-12 [Jatropha curcas]
12 Hb_000847_130 0.1679248006 - - PREDICTED: fimbrin-2 [Jatropha curcas]
13 Hb_039222_010 0.171181896 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
14 Hb_003376_020 0.175657931 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000140_320 0.1771275458 - - delta-8 sphingolipid desaturase [Vernicia fordii]
16 Hb_001491_020 0.1778331383 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_098315_060 0.1801214239 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
18 Hb_162472_010 0.1802543155 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004195_070 0.1802695942 - - cytochrome P450, putative [Ricinus communis]
20 Hb_003894_110 0.180527745 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001105_120 Hb_001105_120 Hb_132840_150 Hb_132840_150 Hb_001105_120--Hb_132840_150 Hb_017908_010 Hb_017908_010 Hb_001105_120--Hb_017908_010 Hb_000417_090 Hb_000417_090 Hb_001105_120--Hb_000417_090 Hb_000190_170 Hb_000190_170 Hb_001105_120--Hb_000190_170 Hb_004117_090 Hb_004117_090 Hb_001105_120--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_001105_120--Hb_010381_100 Hb_132840_150--Hb_004117_090 Hb_012518_080 Hb_012518_080 Hb_132840_150--Hb_012518_080 Hb_132840_150--Hb_000190_170 Hb_039222_010 Hb_039222_010 Hb_132840_150--Hb_039222_010 Hb_000003_210 Hb_000003_210 Hb_132840_150--Hb_000003_210 Hb_000357_140 Hb_000357_140 Hb_017908_010--Hb_000357_140 Hb_000363_390 Hb_000363_390 Hb_017908_010--Hb_000363_390 Hb_015934_050 Hb_015934_050 Hb_017908_010--Hb_015934_050 Hb_000107_280 Hb_000107_280 Hb_017908_010--Hb_000107_280 Hb_162472_010 Hb_162472_010 Hb_017908_010--Hb_162472_010 Hb_000072_230 Hb_000072_230 Hb_000417_090--Hb_000072_230 Hb_000107_360 Hb_000107_360 Hb_000417_090--Hb_000107_360 Hb_000417_090--Hb_000190_170 Hb_000622_170 Hb_000622_170 Hb_000417_090--Hb_000622_170 Hb_000417_090--Hb_004117_090 Hb_000331_170 Hb_000331_170 Hb_000417_090--Hb_000331_170 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_000190_170--Hb_039222_010 Hb_001544_090 Hb_001544_090 Hb_000190_170--Hb_001544_090 Hb_007811_020 Hb_007811_020 Hb_000190_170--Hb_007811_020 Hb_000190_170--Hb_004117_090 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_005496_040 Hb_005496_040 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000032_420 Hb_000032_420 Hb_004117_090--Hb_000032_420 Hb_000527_050 Hb_000527_050 Hb_010381_100--Hb_000527_050 Hb_010889_010 Hb_010889_010 Hb_010381_100--Hb_010889_010 Hb_010381_100--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_010381_100--Hb_000003_750 Hb_003992_280 Hb_003992_280 Hb_010381_100--Hb_003992_280 Hb_001828_110 Hb_001828_110 Hb_010381_100--Hb_001828_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0711908 1.18953 1.70913 0 0.0110783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0575548 0 0.170596 0.0270865 0.665018

CAGE analysis