Hb_001105_130

Information

Type -
Description -
Location Contig1105: 81365-84721
Sequence    

Annotation

kegg
ID rcu:RCOM_1342050
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.12.2 1.3.1.74)
nr
ID XP_012083049.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID A0A067K7X6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14141 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03301: 81206-82342 , PASA_asmbl_03303: 83593-84332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_130 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
2 Hb_002805_090 0.1036301971 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_011310_050 0.1052644429 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
4 Hb_000679_040 0.1072184301 - - Cellulose synthase 1 [Theobroma cacao]
5 Hb_010381_020 0.107485417 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_004326_010 0.1109371652 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_000120_740 0.1119858248 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
8 Hb_002311_130 0.1137334576 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
9 Hb_028639_030 0.1139759431 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
10 Hb_000684_310 0.1140959748 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
11 Hb_009535_030 0.114576802 - - CP2 [Hevea brasiliensis]
12 Hb_003006_080 0.1148523811 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
13 Hb_000244_260 0.1164499582 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
14 Hb_004317_010 0.1177122282 - - hypothetical protein CICLE_v10011038mg [Citrus clementina]
15 Hb_001195_310 0.1179014628 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000494_030 0.1239444757 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
17 Hb_021576_070 0.1240340279 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
18 Hb_007537_030 0.1245292127 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
19 Hb_000254_070 0.124983221 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
20 Hb_001473_170 0.1256325851 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]

Gene co-expression network

sample Hb_001105_130 Hb_001105_130 Hb_002805_090 Hb_002805_090 Hb_001105_130--Hb_002805_090 Hb_011310_050 Hb_011310_050 Hb_001105_130--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_001105_130--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_001105_130--Hb_010381_020 Hb_004326_010 Hb_004326_010 Hb_001105_130--Hb_004326_010 Hb_000120_740 Hb_000120_740 Hb_001105_130--Hb_000120_740 Hb_002311_130 Hb_002311_130 Hb_002805_090--Hb_002311_130 Hb_005116_140 Hb_005116_140 Hb_002805_090--Hb_005116_140 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_001998_220 Hb_001998_220 Hb_002805_090--Hb_001998_220 Hb_000025_500 Hb_000025_500 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080 Hb_000167_040 Hb_000167_040 Hb_011310_050--Hb_000167_040 Hb_011310_050--Hb_000679_040 Hb_001969_140 Hb_001969_140 Hb_011310_050--Hb_001969_140 Hb_001195_310 Hb_001195_310 Hb_011310_050--Hb_001195_310 Hb_001216_110 Hb_001216_110 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010 Hb_000679_040--Hb_001216_110 Hb_000679_040--Hb_001195_310 Hb_000679_040--Hb_001969_140 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_102763_010 Hb_102763_010 Hb_010381_020--Hb_102763_010 Hb_010407_030 Hb_010407_030 Hb_010381_020--Hb_010407_030 Hb_005000_090 Hb_005000_090 Hb_010381_020--Hb_005000_090 Hb_010381_020--Hb_000167_040 Hb_000997_070 Hb_000997_070 Hb_010381_020--Hb_000997_070 Hb_010381_020--Hb_002311_130 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_004326_010--Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_000120_740--Hb_036388_010 Hb_035834_010 Hb_035834_010 Hb_000120_740--Hb_035834_010 Hb_000590_070 Hb_000590_070 Hb_000120_740--Hb_000590_070 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.551735 1.39613 1.37819 3.81991 0.24698 0.625244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.244655 0.243195 0.640804 1.98018 2.75107

CAGE analysis