Hb_001105_170

Information

Type -
Description -
Location Contig1105: 120327-122996
Sequence    

Annotation

kegg
ID rcu:RCOM_1342560
description hypothetical protein
nr
ID XP_012083040.1
description PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K973
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14135 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03307: 120645-122842 , PASA_asmbl_03308: 120720-122938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_170 0.0 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
2 Hb_003848_040 0.0661578566 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
3 Hb_012340_090 0.0663632736 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
4 Hb_002343_040 0.0735048328 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001863_380 0.0786035562 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
6 Hb_012565_070 0.0786488467 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_000300_260 0.0868145765 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
8 Hb_146255_020 0.0886690294 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
9 Hb_003207_180 0.0889048405 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
10 Hb_002946_190 0.0900561527 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
11 Hb_004041_020 0.0940213753 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
12 Hb_001025_090 0.0949975288 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
13 Hb_000270_470 0.0953457061 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
14 Hb_000413_240 0.0953719318 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
15 Hb_000185_050 0.0984333126 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
16 Hb_000012_250 0.0987259567 - - hypothetical protein L484_019524 [Morus notabilis]
17 Hb_001804_090 0.1005348399 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
18 Hb_002163_050 0.1015943126 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
19 Hb_002759_190 0.1016515456 - - PREDICTED: protein NLRC3 [Jatropha curcas]
20 Hb_004807_020 0.1021278137 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]

Gene co-expression network

sample Hb_001105_170 Hb_001105_170 Hb_003848_040 Hb_003848_040 Hb_001105_170--Hb_003848_040 Hb_012340_090 Hb_012340_090 Hb_001105_170--Hb_012340_090 Hb_002343_040 Hb_002343_040 Hb_001105_170--Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_001105_170--Hb_001863_380 Hb_012565_070 Hb_012565_070 Hb_001105_170--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_001105_170--Hb_000300_260 Hb_003848_040--Hb_012565_070 Hb_003848_040--Hb_012340_090 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_001025_090 Hb_001025_090 Hb_012340_090--Hb_001025_090 Hb_002284_150 Hb_002284_150 Hb_012340_090--Hb_002284_150 Hb_002343_040--Hb_001863_380 Hb_146255_020 Hb_146255_020 Hb_002343_040--Hb_146255_020 Hb_004807_020 Hb_004807_020 Hb_002343_040--Hb_004807_020 Hb_002343_040--Hb_001025_090 Hb_000413_240 Hb_000413_240 Hb_001863_380--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_001863_380--Hb_002946_190 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190 Hb_012565_070--Hb_000300_260 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_004312_010 Hb_004312_010 Hb_000300_260--Hb_004312_010 Hb_000173_310 Hb_000173_310 Hb_000300_260--Hb_000173_310 Hb_003213_010 Hb_003213_010 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1979 10.0329 35.5403 14.0848 11.5817 9.24398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4488 25.771 9.14946 11.4334 12.4167

CAGE analysis