Hb_001109_020

Information

Type -
Description -
Location Contig1109: 31268-33824
Sequence    

Annotation

kegg
ID rcu:RCOM_1474460
description hypothetical protein
nr
ID XP_002516646.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A1L209
description Ataxin-7-like protein 3 OS=Danio rerio GN=atxn7l3 PE=2 SV=1
trembl
ID B9RSC7
description SAGA-associated factor 11 OS=Ricinus communis GN=RCOM_1474460 PE=3 SV=1
Gene Ontology
ID GO:0005634
description saga-associated factor 11 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03349: 31249-33785 , PASA_asmbl_03350: 31279-33785 , PASA_asmbl_03351: 32537-32853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001829_060 0.0489862685 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_000046_110 0.0502126166 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
4 Hb_003927_130 0.0600757759 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
5 Hb_000205_270 0.0627533775 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
6 Hb_000883_050 0.0630307863 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
7 Hb_000086_070 0.0646757419 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
8 Hb_000329_310 0.0652551559 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
9 Hb_000377_060 0.0655421926 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_001141_030 0.0692613782 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
11 Hb_008289_060 0.0709267998 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
12 Hb_016065_010 0.0734251387 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
13 Hb_000979_230 0.0737142796 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
14 Hb_001998_050 0.0741056353 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
15 Hb_003455_040 0.0751372561 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
16 Hb_001141_280 0.0764531433 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
17 Hb_000030_100 0.0768871404 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
18 Hb_000671_150 0.077136181 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
19 Hb_000239_010 0.0774222623 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_003632_010 0.0777187603 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001109_020 Hb_001109_020 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_000046_110 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_000046_110--Hb_003927_130 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_003927_130--Hb_000086_070 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_003927_130--Hb_000883_050 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000703_140 Hb_000703_140 Hb_000883_050--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000883_050--Hb_000260_080 Hb_000086_070--Hb_001829_060 Hb_000086_070--Hb_000444_050 Hb_000086_070--Hb_000883_050 Hb_000086_070--Hb_001383_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6687 11.4091 10.5644 19.1579 30.6501 49.6319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.0152 90.9783 72.5134 21.1354 11.2483

CAGE analysis