Hb_001109_050

Information

Type -
Description -
Location Contig1109: 125131-128569
Sequence    

Annotation

kegg
ID rcu:RCOM_0866350
description ankyrin repeat-containing protein, putative
nr
ID XP_012070511.1
description PREDICTED: ankyrin-1 [Jatropha curcas]
swissprot
ID Q4UMH6
description Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=3 SV=1
trembl
ID B9S1L5
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0866350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03352: 125191-128569 , PASA_asmbl_03353: 127147-127495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_050 0.0 - - PREDICTED: ankyrin-1 [Jatropha curcas]
2 Hb_005494_010 0.079917962 - - catalytic, putative [Ricinus communis]
3 Hb_000221_140 0.0867301214 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_033312_010 0.0917538447 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_012150_030 0.0970089256 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_134849_010 0.098129806 - - ATP synthase subunit d, putative [Ricinus communis]
7 Hb_005127_030 0.1002769687 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_010863_050 0.100734336 - - OTU domain-containing protein 6B, putative [Ricinus communis]
9 Hb_005731_160 0.101809362 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_012055_030 0.1019739446 - - Protein FRIGIDA, putative [Ricinus communis]
11 Hb_003747_230 0.1034375641 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
12 Hb_001438_010 0.1052190941 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
13 Hb_000580_150 0.1063603396 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
14 Hb_007741_110 0.1066937173 - - -
15 Hb_000212_440 0.1076722851 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_003053_110 0.1082234027 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
17 Hb_113853_010 0.1086037193 - - 50S ribosomal protein L2, putative [Ricinus communis]
18 Hb_009775_010 0.1095227385 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
19 Hb_000032_500 0.110318195 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
20 Hb_002173_070 0.1103717989 - - MRG family protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001109_050 Hb_001109_050 Hb_005494_010 Hb_005494_010 Hb_001109_050--Hb_005494_010 Hb_000221_140 Hb_000221_140 Hb_001109_050--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001109_050--Hb_033312_010 Hb_012150_030 Hb_012150_030 Hb_001109_050--Hb_012150_030 Hb_134849_010 Hb_134849_010 Hb_001109_050--Hb_134849_010 Hb_005127_030 Hb_005127_030 Hb_001109_050--Hb_005127_030 Hb_113853_010 Hb_113853_010 Hb_005494_010--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_005494_010--Hb_001623_270 Hb_005946_040 Hb_005946_040 Hb_005494_010--Hb_005946_040 Hb_000304_070 Hb_000304_070 Hb_005494_010--Hb_000304_070 Hb_000227_170 Hb_000227_170 Hb_005494_010--Hb_000227_170 Hb_006538_120 Hb_006538_120 Hb_000221_140--Hb_006538_120 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_009775_010 Hb_009775_010 Hb_000221_140--Hb_009775_010 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_114310_070 Hb_114310_070 Hb_033312_010--Hb_114310_070 Hb_013405_080 Hb_013405_080 Hb_033312_010--Hb_013405_080 Hb_033312_010--Hb_001660_120 Hb_033312_010--Hb_134849_010 Hb_002774_190 Hb_002774_190 Hb_033312_010--Hb_002774_190 Hb_000032_500 Hb_000032_500 Hb_033312_010--Hb_000032_500 Hb_003053_110 Hb_003053_110 Hb_012150_030--Hb_003053_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100 Hb_134849_010--Hb_003053_110 Hb_134849_010--Hb_000032_500 Hb_134849_010--Hb_002774_190 Hb_134849_010--Hb_048093_010 Hb_005127_030--Hb_006538_120 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_005127_030--Hb_012150_030 Hb_005127_030--Hb_000212_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9978 7.23875 21.064 10.1208 8.77555 7.23109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9996 15.847 5.4212 15.0337 28.3505

CAGE analysis