Hb_001109_160

Information

Type -
Description -
Location Contig1109: 274357-294126
Sequence    

Annotation

kegg
ID rcu:RCOM_0866110
description DNA binding protein, putative
nr
ID XP_002519876.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9C6S1
description Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=3 SV=3
trembl
ID B9S1L1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0866110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03363: 274693-276476 , PASA_asmbl_03364: 276565-276675 , PASA_asmbl_03365: 277025-294004 , PASA_asmbl_03366: 277516-293991 , PASA_asmbl_03367: 286119-286456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_160 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_006916_030 0.0787900924 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
3 Hb_008616_040 0.0860467379 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
4 Hb_001250_020 0.0906074457 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
5 Hb_000066_040 0.093867199 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
6 Hb_003029_140 0.0971117265 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
7 Hb_000906_070 0.0976027131 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
8 Hb_005914_210 0.0996379711 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_021409_190 0.1042438932 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
10 Hb_018043_020 0.104668351 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
11 Hb_065525_070 0.1055698762 - - unnamed protein product [Homo sapiens]
12 Hb_000762_110 0.1082820135 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
13 Hb_052946_010 0.1097662144 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
14 Hb_000025_500 0.1098243786 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_004041_030 0.1125562164 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
16 Hb_013399_090 0.1137436307 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
17 Hb_010984_010 0.1148456231 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001425_010 0.1157669792 - - sugar transporter, putative [Ricinus communis]
19 Hb_001221_300 0.1158315184 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
20 Hb_000445_370 0.1167812338 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]

Gene co-expression network

sample Hb_001109_160 Hb_001109_160 Hb_006916_030 Hb_006916_030 Hb_001109_160--Hb_006916_030 Hb_008616_040 Hb_008616_040 Hb_001109_160--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_001109_160--Hb_001250_020 Hb_000066_040 Hb_000066_040 Hb_001109_160--Hb_000066_040 Hb_003029_140 Hb_003029_140 Hb_001109_160--Hb_003029_140 Hb_000906_070 Hb_000906_070 Hb_001109_160--Hb_000906_070 Hb_000964_170 Hb_000964_170 Hb_006916_030--Hb_000964_170 Hb_001140_180 Hb_001140_180 Hb_006916_030--Hb_001140_180 Hb_000445_370 Hb_000445_370 Hb_006916_030--Hb_000445_370 Hb_006916_030--Hb_008616_040 Hb_029552_020 Hb_029552_020 Hb_006916_030--Hb_029552_020 Hb_018043_020 Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_008616_040--Hb_001250_020 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_001250_020--Hb_018043_020 Hb_001250_020--Hb_003029_140 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_001250_020--Hb_010984_010 Hb_009193_010 Hb_009193_010 Hb_000066_040--Hb_009193_010 Hb_002805_090 Hb_002805_090 Hb_000066_040--Hb_002805_090 Hb_000665_200 Hb_000665_200 Hb_000066_040--Hb_000665_200 Hb_000025_500 Hb_000025_500 Hb_000066_040--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_000066_040--Hb_004041_030 Hb_003029_140--Hb_018043_020 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_004346_040 Hb_004346_040 Hb_000906_070--Hb_004346_040 Hb_000906_070--Hb_006916_030 Hb_000359_220 Hb_000359_220 Hb_000906_070--Hb_000359_220 Hb_000906_070--Hb_029552_020 Hb_013399_090 Hb_013399_090 Hb_000906_070--Hb_013399_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27323 12.2677 14.7037 14.9903 4.71804 4.45976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8974 1.37834 4.25635 9.58144 37.4495

CAGE analysis