Hb_001110_060

Information

Type -
Description -
Location Contig1110: 135077-136848
Sequence    

Annotation

kegg
ID rcu:RCOM_0803250
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002516581.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID Q08298
description Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1
trembl
ID B9RS62
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_0803250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03431: 134969-136764 , PASA_asmbl_03432: 136134-136666
cDNA
(Sanger)
(ID:Location)		 048_O15.ab1: 135539-136761

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001110_060 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_001408_080 0.0550686349 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
3 Hb_005111_020 0.0631269293 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
4 Hb_003032_110 0.0878158765 - - -
5 Hb_001427_100 0.0894732826 - - acc synthase, putative [Ricinus communis]
6 Hb_036520_030 0.0907793947 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
7 Hb_000085_410 0.0913930501 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
8 Hb_004112_070 0.0916265619 - - -
9 Hb_003466_010 0.0919516157 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
10 Hb_000139_520 0.0935646173 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
11 Hb_000684_110 0.0949538957 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
12 Hb_084812_010 0.0952550542 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
13 Hb_000849_030 0.0959989018 - - PREDICTED: fimbrin-2 [Jatropha curcas]
14 Hb_000739_190 0.101403619 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_012132_050 0.1029629916 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
16 Hb_000922_050 0.1030614857 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
17 Hb_000000_320 0.1058124717 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
18 Hb_050898_030 0.106438729 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004607_060 0.107170228 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
20 Hb_009079_020 0.1083582769 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001110_060 Hb_001110_060 Hb_001408_080 Hb_001408_080 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_001427_100 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_001408_080--Hb_036520_030 Hb_000020_210 Hb_000020_210 Hb_005111_020--Hb_000020_210 Hb_005111_020--Hb_001427_100 Hb_000000_320 Hb_000000_320 Hb_005111_020--Hb_000000_320 Hb_122951_010 Hb_122951_010 Hb_005111_020--Hb_122951_010 Hb_003032_110--Hb_036520_030 Hb_005741_030 Hb_005741_030 Hb_003032_110--Hb_005741_030 Hb_000724_060 Hb_000724_060 Hb_003032_110--Hb_000724_060 Hb_003032_110--Hb_001408_080 Hb_001136_040 Hb_001136_040 Hb_003032_110--Hb_001136_040 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_001427_100--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350 Hb_004032_290 Hb_004032_290 Hb_036520_030--Hb_004032_290 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_003466_010 Hb_003466_010 Hb_036520_030--Hb_003466_010 Hb_036520_030--Hb_010164_030 Hb_000922_050 Hb_000922_050 Hb_000085_410--Hb_000922_050 Hb_000085_410--Hb_001408_080 Hb_000742_290 Hb_000742_290 Hb_000085_410--Hb_000742_290 Hb_003427_070 Hb_003427_070 Hb_000085_410--Hb_003427_070 Hb_004531_130 Hb_004531_130 Hb_000085_410--Hb_004531_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.07806 181.989 323.857 988.669 0 0.443361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.461935 0.363358 0 14.3783 220.518

CAGE analysis