Hb_001114_020

Information

Type desease resistance
Description Gene Name: LRR_4
Location Contig1114: 15239-16822
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_002527910.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03473: 15203-17046
cDNA
(Sanger)
(ID:Location)		 012_M24.ab1: 15246-15862

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_020 0.0 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_000165_120 0.1469613414 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
3 Hb_000165_110 0.1470608507 - - unknown [Medicago truncatula]
4 Hb_001817_130 0.1534590818 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
5 Hb_007777_010 0.1583181286 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
6 Hb_025964_040 0.1621891363 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
7 Hb_010346_020 0.1690130617 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
8 Hb_087587_010 0.1780024741 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_000077_220 0.1886608523 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
10 Hb_020805_100 0.188933479 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
11 Hb_014497_030 0.1924806895 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
12 Hb_002259_110 0.1955439088 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
13 Hb_005568_090 0.1959892032 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000985_040 0.2012200159 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
15 Hb_001622_010 0.2047159246 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002609_190 0.2050486406 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
17 Hb_078954_010 0.2050747021 - - hypothetical protein RCOM_0841800 [Ricinus communis]
18 Hb_075203_010 0.2059820562 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
19 Hb_000988_030 0.2063370579 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001621_110 0.2072467022 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]

Gene co-expression network

sample Hb_001114_020 Hb_001114_020 Hb_000165_120 Hb_000165_120 Hb_001114_020--Hb_000165_120 Hb_000165_110 Hb_000165_110 Hb_001114_020--Hb_000165_110 Hb_001817_130 Hb_001817_130 Hb_001114_020--Hb_001817_130 Hb_007777_010 Hb_007777_010 Hb_001114_020--Hb_007777_010 Hb_025964_040 Hb_025964_040 Hb_001114_020--Hb_025964_040 Hb_010346_020 Hb_010346_020 Hb_001114_020--Hb_010346_020 Hb_087587_010 Hb_087587_010 Hb_000165_120--Hb_087587_010 Hb_002259_110 Hb_002259_110 Hb_000165_120--Hb_002259_110 Hb_001373_160 Hb_001373_160 Hb_000165_120--Hb_001373_160 Hb_000165_120--Hb_000165_110 Hb_000165_120--Hb_010346_020 Hb_002553_010 Hb_002553_010 Hb_000165_120--Hb_002553_010 Hb_005568_090 Hb_005568_090 Hb_000165_110--Hb_005568_090 Hb_004525_070 Hb_004525_070 Hb_000165_110--Hb_004525_070 Hb_000058_050 Hb_000058_050 Hb_000165_110--Hb_000058_050 Hb_002291_060 Hb_002291_060 Hb_000165_110--Hb_002291_060 Hb_002471_020 Hb_002471_020 Hb_001817_130--Hb_002471_020 Hb_001817_130--Hb_000165_120 Hb_001817_130--Hb_087587_010 Hb_001091_030 Hb_001091_030 Hb_001817_130--Hb_001091_030 Hb_003914_030 Hb_003914_030 Hb_001817_130--Hb_003914_030 Hb_001621_110 Hb_001621_110 Hb_007777_010--Hb_001621_110 Hb_004267_060 Hb_004267_060 Hb_007777_010--Hb_004267_060 Hb_152910_010 Hb_152910_010 Hb_007777_010--Hb_152910_010 Hb_000045_160 Hb_000045_160 Hb_007777_010--Hb_000045_160 Hb_000640_190 Hb_000640_190 Hb_007777_010--Hb_000640_190 Hb_010287_030 Hb_010287_030 Hb_007777_010--Hb_010287_030 Hb_000242_030 Hb_000242_030 Hb_025964_040--Hb_000242_030 Hb_025964_040--Hb_007777_010 Hb_025964_040--Hb_087587_010 Hb_025964_040--Hb_000045_160 Hb_000631_090 Hb_000631_090 Hb_025964_040--Hb_000631_090 Hb_096819_010 Hb_096819_010 Hb_010346_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_010346_020--Hb_000345_490 Hb_000988_030 Hb_000988_030 Hb_010346_020--Hb_000988_030 Hb_010346_020--Hb_002259_110 Hb_001484_100 Hb_001484_100 Hb_010346_020--Hb_001484_100 Hb_010346_020--Hb_010287_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.40256 9.74857 11.6608 6.31043 5.28525 4.40327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0230813 0.347623 4.07848 3.43597

CAGE analysis