Hb_001114_050

Information

Type -
Description -
Location Contig1114: 50743-57653
Sequence    

Annotation

kegg
ID rcu:RCOM_0744580
description hypothetical protein
nr
ID XP_002525058.1
description hypothetical protein RCOM_0744580 [Ricinus communis]
swissprot
ID Q1L8Y7
description Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1
trembl
ID B9SGD9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0744580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03477: 55846-75928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_050 0.0 - - hypothetical protein RCOM_0744580 [Ricinus communis]
2 Hb_004208_130 0.1953464902 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
3 Hb_080048_020 0.198285792 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000316_020 0.198576335 - - protein binding protein, putative [Ricinus communis]
5 Hb_001911_060 0.2122112206 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_009644_040 0.2172613733 - - PREDICTED: protein SKIP34 [Jatropha curcas]
7 Hb_082182_010 0.2194748725 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_005224_030 0.2197007411 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
9 Hb_002609_060 0.2393496067 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
10 Hb_000907_170 0.2404288703 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000454_070 0.2417371985 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
12 Hb_000616_040 0.2445784489 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
13 Hb_003913_080 0.2473668925 - - rpl27A [Hemiselmis andersenii]
14 Hb_000731_250 0.2508226903 - - -
15 Hb_006342_020 0.2513202021 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_007747_180 0.2533975788 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
17 Hb_000200_290 0.2567730806 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
18 Hb_165071_030 0.2582204804 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002719_080 0.260816043 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
20 Hb_002835_100 0.2621196149 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001114_050 Hb_001114_050 Hb_004208_130 Hb_004208_130 Hb_001114_050--Hb_004208_130 Hb_080048_020 Hb_080048_020 Hb_001114_050--Hb_080048_020 Hb_000316_020 Hb_000316_020 Hb_001114_050--Hb_000316_020 Hb_001911_060 Hb_001911_060 Hb_001114_050--Hb_001911_060 Hb_009644_040 Hb_009644_040 Hb_001114_050--Hb_009644_040 Hb_082182_010 Hb_082182_010 Hb_001114_050--Hb_082182_010 Hb_000297_020 Hb_000297_020 Hb_004208_130--Hb_000297_020 Hb_000907_170 Hb_000907_170 Hb_004208_130--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_004208_130--Hb_145084_010 Hb_004931_100 Hb_004931_100 Hb_004208_130--Hb_004931_100 Hb_002138_010 Hb_002138_010 Hb_004208_130--Hb_002138_010 Hb_002609_060 Hb_002609_060 Hb_004208_130--Hb_002609_060 Hb_021888_060 Hb_021888_060 Hb_080048_020--Hb_021888_060 Hb_080048_020--Hb_002609_060 Hb_080048_020--Hb_009644_040 Hb_132998_010 Hb_132998_010 Hb_080048_020--Hb_132998_010 Hb_080048_020--Hb_001911_060 Hb_000161_150 Hb_000161_150 Hb_000316_020--Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000316_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000316_020--Hb_000771_130 Hb_000432_050 Hb_000432_050 Hb_000316_020--Hb_000432_050 Hb_003754_080 Hb_003754_080 Hb_000316_020--Hb_003754_080 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_002289_090 Hb_002289_090 Hb_001911_060--Hb_002289_090 Hb_002835_100 Hb_002835_100 Hb_001911_060--Hb_002835_100 Hb_001222_050 Hb_001222_050 Hb_001911_060--Hb_001222_050 Hb_002748_030 Hb_002748_030 Hb_001911_060--Hb_002748_030 Hb_000116_430 Hb_000116_430 Hb_001911_060--Hb_000116_430 Hb_073866_010 Hb_073866_010 Hb_009644_040--Hb_073866_010 Hb_001842_130 Hb_001842_130 Hb_009644_040--Hb_001842_130 Hb_008516_040 Hb_008516_040 Hb_009644_040--Hb_008516_040 Hb_150818_020 Hb_150818_020 Hb_009644_040--Hb_150818_020 Hb_115940_010 Hb_115940_010 Hb_009644_040--Hb_115940_010 Hb_005439_040 Hb_005439_040 Hb_082182_010--Hb_005439_040 Hb_007747_180 Hb_007747_180 Hb_082182_010--Hb_007747_180 Hb_002486_010 Hb_002486_010 Hb_082182_010--Hb_002486_010 Hb_043485_010 Hb_043485_010 Hb_082182_010--Hb_043485_010 Hb_015690_020 Hb_015690_020 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.485076 0.485744 0 0.034736 0.4069 0.962272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56077 8.7526 8.91054 8.98482 2.62744

CAGE analysis