Hb_001114_120

Information

Type -
Description -
Location Contig1114: 116528-120256
Sequence    

Annotation

kegg
ID rcu:RCOM_0886040
description protein with unknown function
nr
ID XP_002522655.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LXC0
description Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1
trembl
ID B9S9I6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0886040 PE=4 SV=1
Gene Ontology
ID GO:0048046
description guanosine nucleotide diphosphate dissociation inhibitor at5g09550

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03489: 116369-117593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_120 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002307_010 0.0816322324 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
3 Hb_000112_050 0.0864410358 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
4 Hb_000203_080 0.0910531876 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
5 Hb_003847_050 0.1012853597 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
6 Hb_002448_020 0.1049373553 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_007386_030 0.1112800221 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
8 Hb_000594_160 0.1136652232 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
9 Hb_002003_010 0.1160687996 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
10 Hb_001040_200 0.1202585295 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
11 Hb_001329_110 0.1212875994 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
12 Hb_000017_320 0.1218217398 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
13 Hb_000840_050 0.1227029667 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
14 Hb_006846_030 0.1232719177 - - respiratory burst oxidase A [Manihot esculenta]
15 Hb_001568_010 0.1278009778 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005766_010 0.1297057254 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_023956_010 0.1316092423 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_000096_210 0.1339444005 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
19 Hb_011129_020 0.1340445932 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
20 Hb_002475_030 0.1343276849 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001114_120 Hb_001114_120 Hb_002307_010 Hb_002307_010 Hb_001114_120--Hb_002307_010 Hb_000112_050 Hb_000112_050 Hb_001114_120--Hb_000112_050 Hb_000203_080 Hb_000203_080 Hb_001114_120--Hb_000203_080 Hb_003847_050 Hb_003847_050 Hb_001114_120--Hb_003847_050 Hb_002448_020 Hb_002448_020 Hb_001114_120--Hb_002448_020 Hb_007386_030 Hb_007386_030 Hb_001114_120--Hb_007386_030 Hb_001018_080 Hb_001018_080 Hb_002307_010--Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_002307_010--Hb_011537_020 Hb_002307_010--Hb_000112_050 Hb_000834_040 Hb_000834_040 Hb_002307_010--Hb_000834_040 Hb_003847_170 Hb_003847_170 Hb_002307_010--Hb_003847_170 Hb_000112_050--Hb_003847_050 Hb_001568_010 Hb_001568_010 Hb_000112_050--Hb_001568_010 Hb_000112_050--Hb_000203_080 Hb_001040_200 Hb_001040_200 Hb_000112_050--Hb_001040_200 Hb_000112_050--Hb_002448_020 Hb_000840_050 Hb_000840_050 Hb_000203_080--Hb_000840_050 Hb_003842_010 Hb_003842_010 Hb_000203_080--Hb_003842_010 Hb_001329_110 Hb_001329_110 Hb_000203_080--Hb_001329_110 Hb_002622_010 Hb_002622_010 Hb_000203_080--Hb_002622_010 Hb_175758_010 Hb_175758_010 Hb_000203_080--Hb_175758_010 Hb_023956_010 Hb_023956_010 Hb_003847_050--Hb_023956_010 Hb_006846_030 Hb_006846_030 Hb_003847_050--Hb_006846_030 Hb_003847_050--Hb_001568_010 Hb_012787_050 Hb_012787_050 Hb_003847_050--Hb_012787_050 Hb_019026_050 Hb_019026_050 Hb_003847_050--Hb_019026_050 Hb_003847_050--Hb_002448_020 Hb_002448_020--Hb_006846_030 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_002448_020--Hb_007386_030 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_007386_030--Hb_007875_020 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_007386_030--Hb_065521_010 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141385 0.5322 0.61327 1.04572 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0322181 0 0 1.54853 0.582618

CAGE analysis