Hb_001114_130

Information

Type transcription factor
Description TF Family: MIKC
Location Contig1114: 125209-143201
Sequence    

Annotation

kegg
ID rcu:RCOM_0885930
description MADS-box transcription factor, putative
nr
ID XP_012081349.1
description PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FVC1
description MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1
trembl
ID A0A067K1G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18739 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein svp-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03490: 125221-142893 , PASA_asmbl_03491: 125221-143072 , PASA_asmbl_03492: 139121-143004 , PASA_asmbl_03494: 135429-135757
cDNA
(Sanger)
(ID:Location)		 012_L21.ab1: 126253-142893 , 016_I13.ab1: 125631-142984

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_130 0.0 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
2 Hb_000898_050 0.0876131656 - - -
3 Hb_000692_220 0.0904550014 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
4 Hb_001205_150 0.0916220831 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
5 Hb_001235_030 0.0956422666 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
6 Hb_000107_310 0.0975579643 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
7 Hb_001461_010 0.1025367487 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
8 Hb_004374_140 0.1026240041 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
9 Hb_010174_020 0.1036521383 - - protein binding protein, putative [Ricinus communis]
10 Hb_000479_190 0.1073334335 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002005_020 0.1079657232 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008544_010 0.1097673063 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
13 Hb_037887_010 0.1119990777 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
14 Hb_000635_150 0.1127813446 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
15 Hb_180301_010 0.1131841274 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
16 Hb_001504_080 0.1133297582 - - golgi snare 11 protein, putative [Ricinus communis]
17 Hb_029866_070 0.1147358291 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
18 Hb_001153_060 0.1158134621 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001430_070 0.116041727 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001234_100 0.1163066042 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001114_130 Hb_001114_130 Hb_000898_050 Hb_000898_050 Hb_001114_130--Hb_000898_050 Hb_000692_220 Hb_000692_220 Hb_001114_130--Hb_000692_220 Hb_001205_150 Hb_001205_150 Hb_001114_130--Hb_001205_150 Hb_001235_030 Hb_001235_030 Hb_001114_130--Hb_001235_030 Hb_000107_310 Hb_000107_310 Hb_001114_130--Hb_000107_310 Hb_001461_010 Hb_001461_010 Hb_001114_130--Hb_001461_010 Hb_003092_030 Hb_003092_030 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_006198_080 Hb_006198_080 Hb_000898_050--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_000898_050--Hb_006429_010 Hb_000692_220--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_000692_220--Hb_000479_190 Hb_010174_020 Hb_010174_020 Hb_000692_220--Hb_010174_020 Hb_092337_010 Hb_092337_010 Hb_000692_220--Hb_092337_010 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_001205_150--Hb_010174_020 Hb_001205_150--Hb_000479_190 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_000107_310--Hb_003125_010 Hb_000107_310--Hb_003092_030 Hb_000107_310--Hb_006198_080 Hb_000656_110 Hb_000656_110 Hb_000107_310--Hb_000656_110 Hb_002759_060 Hb_002759_060 Hb_000107_310--Hb_002759_060 Hb_180301_010 Hb_180301_010 Hb_000107_310--Hb_180301_010 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3071 10.7277 12.3207 44.5008 27.9828 48.1275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.8217 49.8 74.9635 18.6235 26.7432

CAGE analysis